Scaffold Ga0209596_1001466

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001466
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20343
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (26.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F071998	Metagenome / Metatranscriptome	121	Y
F088891	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100146637	F088891	AGG	MKLLLTLTVLLVGCNAPEPVDHTQVTQTFVDSKIRFVKIENCEYIVTSFQPLVIAHKGNCKNHK
Ga0209596_100146639	F005293	N/A	MNDNMTPFIPTRDDLIGFISDTYKEINGFRPRPNWSDLSYEQLDKWGRELSAEVVAYRKQEAIRNRIARNLRRAQLRAWVEKKKGYFTPTTFTIGSIVTV
Ga0209596_100146643	F071998	N/A	MNATLIDQAIKKFPKAKRIAVENFTMGYDTLNMEASMNLEADSRCYSWNGNTISAILYVLNHKHAFKTMAD