Scaffold Ga0209596_1001286

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001286
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21866
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (44.44%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F010611	Metagenome / Metatranscriptome	301	N
F018171	Metagenome / Metatranscriptome	236	Y
F019637	Metagenome / Metatranscriptome	228	Y
F038227	Metagenome / Metatranscriptome	166	N
F078377	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10012861	F019637	N/A	GERETPIISSDQVVNTFTKMPNQIQFLVDQFGLANTAWFIRLMKSGTTPEQIVGSLVPSNYDSRRDGVFRALQFAGNLPDSMMPEEIKNALQP
Ga0209596_100128612	F002843	N/A	MIVPVDIISVQCNQNNSLFVTTGTDYDNSGTIVGSEITSQYTLNPGDDLTGQPVEVVNIANALWTPAVVAAYKAANPVVEAAQPTE
Ga0209596_100128617	F005024	GGAG	MTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGTSRILKRLHLIVQARAAKDPTKNFSGGLYGKTMKKAASSFMRKAIGSVGYLRSAVVKSIRIYNRGFSQYSAPKWVPLVKPPGYRAKKKPNAALVAMANQYGLQEENVAIHKGTVAHGFQAIPGFNPTAFVSMRTGVADNQYNRVAQIYNEAMQKAMDDETTEMVNHMTEALLANGKVLEDNGISIK
Ga0209596_100128618	F006107	GGA	MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAMLTTVQVLDNRILPLFDDTGASALDAAANDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL
Ga0209596_100128619	F018171	N/A	MANTQGRKYIFGSPATLNLYNAAGTEIMAAVISPDLESYDISHEADTEEVRDSSGEVVGHIGYNNRLTLTVNFIPSGTSTANALLSASLPNVNGTAIITGAPVIVMGGFTNAINADTSNRWIYAGGGSIKTTQSGKSTGTITLKKYPSIAASGAATNL
Ga0209596_10012862	F010611	N/A	MNQKDYRRHSGLTSGYVTDLVSRGMPLDSPEAADAWRAKNIKARTKRLPIAAPTIATTAIEQEGPYRPIEAESPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKS
Ga0209596_100128627	F078377	N/A	MSNIITVQLPTETSYWGSTATEADVYRIIGNLETMIRSQFPDVDIDFQHIQEPRGRGIFGDDESLMDSIYQFIQDNWTAAL
Ga0209596_10012864	F006262	GAG	VKIRPEVFTFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLNDYDLAVYYLEQDGNLTPTDAQIYTKMVTVVLIAATSYGGDFSNFRREASYRMGMS
Ga0209596_10012867	F005633	N/A	MRIATTVAVDKTGKTKLLAGPEIDATLQRINFNTVSVPEGGKLILWVQGALAPKIRKG
Ga0209596_10012869	F038227	GAG	MISLGIALNRLFSGQAGGTDAPVLRRDVLQEDDFFVLQEDGTGKIVITFGTFDSLLLEDAGFLQQEDLFKLAIQSN