Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1001042 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24595 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (40.82%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024040 | Metagenome / Metatranscriptome | 207 | Y |
F032536 | Metagenome / Metatranscriptome | 179 | Y |
F039478 | Metagenome / Metatranscriptome | 163 | Y |
F039497 | Metagenome / Metatranscriptome | 163 | N |
F050171 | Metagenome / Metatranscriptome | 145 | Y |
F062447 | Metagenome / Metatranscriptome | 130 | N |
F104483 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100104216 | F039478 | GGA | MNWVKILDFIDGIFPEEKVQPTLGTLYKIKGEALPFRYIRFANDSYPNKAIYHFKHHQLKEYKFNNLDKVEREANKEEVRLYNLIKSHINETARTNQYKFNNH |
Ga0209596_100104223 | F050171 | GAG | MGMFNYIKVEQDLPLNEELKTLNIDFKKEEYQTKELEDSIMSTYIIRDYRLFELKVDGHWEDNPSYVKGETKFSEFFNKNRWVEDSREEVFRDDYTGTFTFGNYIYGETKESYDLFPDWKCVVVKGLLTEISLITPIEKHSSKDRIESDENFFKKMNDHKSKMKCPVYSLYFNYYVKPIESLGRKISYKLDKPIKVLNWLQWKGISKAVNLLTPR |
Ga0209596_100104232 | F039497 | N/A | MSEENNFNCDAGNQLRETLFKDIVRYAKESDMTAFQAIGVLESLKYDLLNAMREMGNEEE |
Ga0209596_100104236 | F104483 | GAG | MKKKIIDKIDLVIEDIVNIQELIDFDTSDSSEHDLDAVVNLLAEIRGKVNNEEEEIEKIDLKDL |
Ga0209596_100104238 | F024040 | N/A | MMETIILHTNMNFFVSGHNWFAKVALDKDVKKSDRYTEATTRAIESLLDQEEKEGVDLKVLDYDDYGLGLITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL |
Ga0209596_100104239 | F062447 | AGGAGG | MNQKIFWEKNSRIKGIVPKEQIIEKTQTHKFPCEAVTIRMSNVNDKNPTAVAYFHGKEAKQTSWNGTNYIVAETKLMVSLTKEGNGYNFNGSIIDFFSLQDLKEVLDSVRETLNKL |
Ga0209596_100104240 | F032536 | N/A | MSERKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRKNYNSLANRHHLVIDGKIVPYVGEQDNYEFDKKLGCHKDKTTGLELSLDEKEYEYLLDEIIFSLQMIVDEDNIDINLDRLYEVYPKGFDPIEDRQMFLTPQGDGTSLVEFESKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD |
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