NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1001042

Scaffold Ga0209596_1001042


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1001042 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24595
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (40.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F032536Metagenome / Metatranscriptome179Y
F039478Metagenome / Metatranscriptome163Y
F039497Metagenome / Metatranscriptome163N
F050171Metagenome / Metatranscriptome145Y
F062447Metagenome / Metatranscriptome130N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100104216F039478GGAMNWVKILDFIDGIFPEEKVQPTLGTLYKIKGEALPFRYIRFANDSYPNKAIYHFKHHQLKEYKFNNLDKVEREANKEEVRLYNLIKSHINETARTNQYKFNNH
Ga0209596_100104223F050171GAGMGMFNYIKVEQDLPLNEELKTLNIDFKKEEYQTKELEDSIMSTYIIRDYRLFELKVDGHWEDNPSYVKGETKFSEFFNKNRWVEDSREEVFRDDYTGTFTFGNYIYGETKESYDLFPDWKCVVVKGLLTEISLITPIEKHSSKDRIESDENFFKKMNDHKSKMKCPVYSLYFNYYVKPIESLGRKISYKLDKPIKVLNWLQWKGISKAVNLLTPR
Ga0209596_100104232F039497N/AMSEENNFNCDAGNQLRETLFKDIVRYAKESDMTAFQAIGVLESLKYDLLNAMREMGNEEE
Ga0209596_100104236F104483GAGMKKKIIDKIDLVIEDIVNIQELIDFDTSDSSEHDLDAVVNLLAEIRGKVNNEEEEIEKIDLKDL
Ga0209596_100104238F024040N/AMMETIILHTNMNFFVSGHNWFAKVALDKDVKKSDRYTEATTRAIESLLDQEEKEGVDLKVLDYDDYGLGLITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0209596_100104239F062447AGGAGGMNQKIFWEKNSRIKGIVPKEQIIEKTQTHKFPCEAVTIRMSNVNDKNPTAVAYFHGKEAKQTSWNGTNYIVAETKLMVSLTKEGNGYNFNGSIIDFFSLQDLKEVLDSVRETLNKL
Ga0209596_100104240F032536N/AMSERKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRKNYNSLANRHHLVIDGKIVPYVGEQDNYEFDKKLGCHKDKTTGLELSLDEKEYEYLLDEIIFSLQMIVDEDNIDINLDRLYEVYPKGFDPIEDRQMFLTPQGDGTSLVEFESKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD

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