Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1001042 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1001042 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24595
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (40.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24595

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (40.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F039478	Metagenome / Metatranscriptome	163	Y
F039497	Metagenome / Metatranscriptome	163	N
F050171	Metagenome / Metatranscriptome	145	Y
F062447	Metagenome / Metatranscriptome	130	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100104216	F039478	GGA	MNWVKILDFIDGIFPEEKVQPTLGTLYKIKGEALPFRYIRFANDSYPNKAIYHFKHHQLKEYKFNNLDKVEREANKEEVRLYNLIKSHINETARTNQYKFNNH
Ga0209596_100104223	F050171	GAG	MGMFNYIKVEQDLPLNEELKTLNIDFKKEEYQTKELEDSIMSTYIIRDYRLFELKVDGHWEDNPSYVKGETKFSEFFNKNRWVEDSREEVFRDDYTGTFTFGNYIYGETKESYDLFPDWKCVVVKGLLTEISLITPIEKHSSKDRIESDENFFKKMNDHKSKMKCPVYSLYFNYYVKPIESLGRKISYKLDKPIKVLNWLQWKGISKAVNLLTPR
Ga0209596_100104232	F039497	N/A	MSEENNFNCDAGNQLRETLFKDIVRYAKESDMTAFQAIGVLESLKYDLLNAMREMGNEEE
Ga0209596_100104236	F104483	GAG	MKKKIIDKIDLVIEDIVNIQELIDFDTSDSSEHDLDAVVNLLAEIRGKVNNEEEEIEKIDLKDL
Ga0209596_100104238	F024040	N/A	MMETIILHTNMNFFVSGHNWFAKVALDKDVKKSDRYTEATTRAIESLLDQEEKEGVDLKVLDYDDYGLGLITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0209596_100104239	F062447	AGGAGG	MNQKIFWEKNSRIKGIVPKEQIIEKTQTHKFPCEAVTIRMSNVNDKNPTAVAYFHGKEAKQTSWNGTNYIVAETKLMVSLTKEGNGYNFNGSIIDFFSLQDLKEVLDSVRETLNKL
Ga0209596_100104240	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRKNYNSLANRHHLVIDGKIVPYVGEQDNYEFDKKLGCHKDKTTGLELSLDEKEYEYLLDEIIFSLQMIVDEDNIDINLDRLYEVYPKGFDPIEDRQMFLTPQGDGTSLVEFESKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1001042

Overview

Ecosystem & Geography

Associated Families

Sequences