Scaffold Ga0209596_1001017

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001017
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24840
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (34.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F007260	Metagenome / Metatranscriptome	354	N
F009603	Metagenome / Metatranscriptome	315	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F028809	Metagenome	190	N
F039136	Metagenome	164	N
F050365	Metagenome / Metatranscriptome	145	N
F076018	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100101720	F010835	AGGA	MNAVALRTERALVDWLAAEDWSASPLGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPTERTCEIDITATLQLSADDTSEAQALAVVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI
Ga0209596_100101721	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHRGSSAYAFNAKAGFNPSSHVRMNIGLADNQVGTVEGIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT
Ga0209596_100101722	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSNGDRLLQESGNFLLQENTDRLLLTFGKMLPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK
Ga0209596_100101727	F002843	N/A	MIVPVNIVAVQCNQNNSLFVTTGVDYDNSGSIVGSEITSQYTLNPGDSLEGQPTEVVSIANALWTPAVVAAYKAANPVVEAAQPTE
Ga0209596_100101734	F009603	GGA	LRTTYASKAALTLLEALTAKLTVSANSMESGNVVRSTSSSDVSVEFAEPGKGTAAPIEMLQMWESLLTDYDYAVTLLAGDAIPSPTDLQIYNKMLSAVLVSTTRYYADFTQFRREATTRM
Ga0209596_100101736	F028809	GGA	VEILNCQKPSGIESLRQNRIAIKAIERQTGFEFLGISNDEPSRIDGFIYDPAKGIISASYEVKTRNYGLIKLKTTFGNRWMISWSKLQAALEVSRHTKLPFFGILHLHDDDLVMMQEIFNRSASWAANHQVTEKTVNGRSEKVALIDMSGAAHYQIKSGQITEELF
Ga0209596_100101737	F050365	N/A	MNQTDYVKHSGLTKGRVSQLTAAGMPLTSPEEADAWRGSRKGIGGRPSTLQRMTAIQQQPSPELAGGPYRPPEASAAINAALATEDSPQGAYERQKKIERAAYDLAVEALQSRSLDAGRMVSVHATAAKNLISSRDDVLAQSEKERTLVSGAWVKKAMQEHDGAVSQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS
Ga0209596_100101738	F076018	N/A	GDRAGPIILRERTCYCSTNPMSLSTDYLLLNIGHSTLKWHLSRIKSGSFTIDQVAMFYAPDPKKSVYKTVTRGLEELVKMKPENLPIQLR
Ga0209596_10010175	F039136	N/A	MTIEIKYTASVFTPAGWRGVTITAKATKTSEKMALVVEVLEINGESPKSDMSRTGASRQRYNGNSISCREVGAKKRLSACEILN