Scaffold Ga0209596_1000985

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000985
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25242
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (40.91%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006135	Metagenome / Metatranscriptome	380	N
F014610	Metagenome / Metatranscriptome	261	N
F016254	Metagenome	248	Y
F016803	Metagenome / Metatranscriptome	244	Y
F018915	Metagenome / Metatranscriptome	232	Y
F023096	Metagenome / Metatranscriptome	211	N
F025727	Metagenome / Metatranscriptome	200	N
F045750	Metagenome / Metatranscriptome	152	N
F064717	Metagenome / Metatranscriptome	128	N
F101027	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100098517	F101027	N/A	MRDIIETFKRSSDKQSLKASVGRAIFCPRCENLMDYRRAVEFSVWENETGKCATVRAMCAPCWDGVRELVTKPGMKYRVDVIDGRKL
Ga0209596_100098521	F016254	GAG	MLSGVMKAKGSGDLVKVRMRAKPERGTKMVLSPDTKNKAMEAARYGMPLERIAMLCGFSSSETQWSRWINANPAFRKELDQARAEGELLLQRKIMSGEANWQAAGWMLERTRGYVARASLEHTGKGGKELSVSGNLLGAFGGQSK
Ga0209596_100098527	F016803	AGAAGG	MISFISRVRAAWAFGRHQCWVDALPWNRDDATTLNNFFKSETGKKFKDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMADRESITGQEDDPDSVTNT
Ga0209596_10009853	F006135	N/A	MSVRIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDLDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIYRPKTVAYNGVQSTPMKSE
Ga0209596_100098531	F014610	GGAG	MPIYTFENKGKSVEQIAPMGTDSLVIKGERWTRQPVARFGVTGFAREAELKDKVKQGFSRMENRQGTRFESTFSKNQIRKIWDI
Ga0209596_100098538	F018915	N/A	VNWVYQILKALLDWFRETPPTDVQHGKAPEALKSDLADRIVDLPGLPDDQGGPGPFR
Ga0209596_10009854	F064717	AGGAG	MAKMLGPVPAFKAPDPLIYRRWEAVPVKIRESILRDNSTFTYRELAKKYGISHSCVWNIKNKQPNKQ
Ga0209596_10009855	F045750	GAGG	METVMSRIGRMLGMRMHNTKRPVCPVPQSIQTVSSDPDTVAIDKVPKRKTRKHLKSTYMKTSDSIDKVNALRADGLTYKGIGHVMNISKQRVFQIIAAGKKRDASNNKWTAGLSSRNANLMEKLGIKDKETAIHAIHNRDIVPFKWPNFGVRSYHDLCSWLGTLPADPGLGRHCPHCGKTSKQ
Ga0209596_10009856	F025727	N/A	MSRHAFPLVESIKVVHLSDGRTIRVVRDRTEENLKTNYGDGDIHLTCVSQAHDPIEMIKTLARLESVRSVELVDSKGNGIVVHKQK
Ga0209596_10009857	F023096	N/A	MKTSSTHDLVNALNILSAELDTQDGIPNALCAEASTRLLELVQLTSDLTTHIVSNPVHHGRCNAKTKGSYCNCILARLITP