Scaffold Ga0209596_1000929

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000929
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25928
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (7.58%)
• Novel Protein Genes: 21
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (4.76%)
• Associated Families: 21

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F006935	Metagenome	361	Y
F010320	Metagenome / Metatranscriptome	305	Y
F012774	Metagenome / Metatranscriptome	277	Y
F012978	Metagenome / Metatranscriptome	275	Y
F013085	Metagenome	274	Y
F013759	Metagenome / Metatranscriptome	268	Y
F014137	Metagenome / Metatranscriptome	265	Y
F015729	Metagenome / Metatranscriptome	252	Y
F016809	Metagenome / Metatranscriptome	244	Y
F017485	Metagenome	240	Y
F018537	Metagenome	234	Y
F019136	Metagenome / Metatranscriptome	231	Y
F022649	Metagenome	213	Y
F040624	Metagenome	161	N
F041601	Metagenome / Metatranscriptome	159	Y
F047676	Metagenome / Metatranscriptome	149	Y
F048309	Metagenome / Metatranscriptome	148	Y
F048996	Metagenome	147	Y
F062761	Metagenome	130	Y
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100092910	F013759	N/A	MKLEFGLSVFSRSETLLGLEITTHNGIMVGEDHDLYDQRIVEFSIGIIIAIFTIGFVSKGQKLDTPDMDNVQRAMKAFESELDK
Ga0209596_100092912	F019136	N/A	MSLTIKNYKKLENWSHQYKEFTIGEVVEFETEYLFYVAYNSTPYIIKIFRQGTSTIEYEMVLRDGAGITQYGREWIKGRKLKSFELTALIFEALIVRFKPKAQTQMNNNINYFPS
Ga0209596_100092915	F014137	N/A	MLTIKNIQTIIGQEYNDVFNIIGVKEHKDHYEFTLGYDATIKPAVETILLHRKQTDNGMYIMEYNNKTLWLNTNEFDTTDKIIICMQTI
Ga0209596_100092916	F103248	N/A	MLTIKNIDKIINITSPLPYKWYISAVDELPDDLYGFSVYINDLIVITFYLNRESQYMSGRNEPVYRLYKNFDQSKINRWLSLHQISPYVIKQLINEMLNQ
Ga0209596_100092921	F047676	N/A	MELILTLIVLIIVWCIAFIVGNKQGTNRIINQIKKDGGYYDMEYTSSAYPILDPTSSVNNDTMGTIGSKPKTQTDYQREHKVEDETPAIDFMHNWIQEKSGKKPVSQKRKPKTTKEWEDEFDLGGHE
Ga0209596_100092922	F040624	N/A	MKSEKHMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSIRLERLKERFERIEKQISKLKN
Ga0209596_100092924	F006935	N/A	MDKRYAKQIIEWAEEAKEILTVRKEIIMDDDVTDEQLGTIIRMMYRAKVEAQNEQIKHAKQKTGL
Ga0209596_100092928	F041601	N/A	MKQQILKLVNRIKEDLKAIDKDGVSHPLIDNVYENLELIEDEIYENDAAADALSFEDEDY
Ga0209596_100092929	F012774	AGG	VKGEPIILHIDLGNQSLTNWLKENQYVIFSELIRYSKKLLKENLTFIQAIMVSNLYDNIVFIIKRDNVKLTLDKAMDFFMDIEEYEKCVEIRDLYILIENLKNETTDTKISKSNQRGLKSNR
Ga0209596_100092933	F062761	N/A	MGFNHCYLTSVKDLERHLDNVGLKKFIKNYRSYDALTGPSECFEFIEEKIKEYEEVINDIDIGDGDGELQKGNT
Ga0209596_100092936	F012978	N/A	MNFNKTDEELKMMSEDELFEYLDAKTLHLKQHTSPLSSYYTKKFASIGAAVSNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE
Ga0209596_100092937	F013085	N/A	MDILSEIIEASNEMIDALEETDFFVETPFIDRIPLKRALQIAMQKKWEQEDDMFLNDAEFLEVCQSVSNKSIGKTIENLVDKGALNMSINEDGEILYSANKDFQFDKDDDDEFQQD
Ga0209596_100092938	F016809	N/A	MSKINNEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKNVQSHSIFPDEVQYDDEYYKSSYLPTPDEEVENYKQTKQNGHT
Ga0209596_100092943	F015729	N/A	MRRPKNFETIDAIDFEIHGHSFHTDLDLLQNKEKSSWVWVFPHGGILGDYVVLFELKWEHNCYSMKKCVLGEGNTGNYIFQDHLLSSDMMQTKDEFVSHIKWIIEQEMRVGTFQN
Ga0209596_100092953	F018537	N/A	MASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKNWGTGTQNDVPWRVAQYIDIYLHSANPNRIRIWKKQGMERQNLQLNDNNVIIARTLGSMGCGLADGVKHTQQSKSIPALQAIQTMQYNFQMQDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQEILDYTYLCNRVSFSQLKSFYDIVMRGNATTQNGGSFIHHLHSLIDVRNAIGRRCGRYLYKDTDGKYKVSNI
Ga0209596_100092955	F002092	N/A	MRTTNQKAIEYLNGNPIVANFINKVNIQRKDHYVKADMVSQWKELTVEIGNKFIRLWDGTGCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL
Ga0209596_100092958	F010320	N/A	MKTNNENAFINDAYDEESKLHIEFMSDVKKHDYSYMMSDDHSVYMNGNSREKQIKEKLHALIGICKYDASDLLDEVLTYVKQEYNDKDSNGDDLTHRVIKGWFKPYTETERKLFTLNNDR
Ga0209596_100092961	F048996	N/A	MLIINNIEKLNNKTIGAWRVAGVEIDYQRTSLSPDRSYTIRLSRSGAAVGAAIIIEREAGQFGYNVSVCYEDYDNVISINAVGEKELKNKDVFLSLMRGILDAEYNKIK
Ga0209596_100092962	F048309	N/A	MLTIKNIDKVINMTCYGRDIYHVRTTTNTIGEHAYVFEFDLIDGSGVGGWGTPKEVHLIRNEYNGTYRLFCMGLQVATERRIEISEVKCLTSLLVEISEVLRKTKYWWEHSNLQNK
Ga0209596_100092963	F022649	N/A	MLHIKNPNDIKGMNFVNHRYTLLSVEIYYEKYRFAFKEISNWVYIDVYRYPKWDSEQNVNMYRVDNGKFDNHWISAKYFGKIKNMKFTFTQALKDL
Ga0209596_10009298	F017485	N/A	MSKKTIIEAVGFILMVVTILTLLCVLYEVNELKGLMKDANNFRSIVNRK