Scaffold Ga0209596_1000843

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000843
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27511
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062456	Metagenome	130	Y
F071240	Metagenome	122	Y
F076102	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100084326	F071240	N/A	MKIGINLVGVSYNDGKIGRYRNYEDAIDGFMTNVVNPLKEEGHEISFYLFTYDSPKKEDIIKIYNPKKSTFLDPNYNKLGGGDKLENGMKTISVTYINSLYELENEDLDLVISTRFDISFNKNPFKEYEYDLNKCNYLWREPEFTHVPIVSDTFIVFPHSMTSNLIDAIIEMETNPPHGVGVAMHNIYIPMCNQVGKDNVKIVCDEFKKSHINDIYTLTRHE
Ga0209596_100084328	F076102	N/A	MKDLVISAIANYLPEKIKIYIESLNDCGYDGDKVMICYNIPKETIDYLTDKAWECYGAELQGHPHMRRLIDMWWFLQNDVREWNHIITTDVRDIVWQTNPSDWLRLTNKDKIICASECVTYENEPWGHKNIHEGYGPMFWDWIKSNTIANVGVIAGKHKLVKDLLMLNWLVSQSGDVRHFTDQSSFNFVIHNELIKDKVDINSDFALQVGTTKIDFKIENDLVMNGDVPFVLVHQYDRNSELNTLITNKYK
Ga0209596_10008435	F062456	N/A	MVNRLEALSHIDTEDRKVTKEFLEQNKWFGIQMGGKWDLDLEVHEFKRGCDVEKINYGMDRFKSHNHFRIPVRKQKYWNNSTTYVAKDNSIWPNRYKGWYVDYIQFLNNDLDELLWYDYKLIREYINNLYTDNSLKKEWNIESERTFITIPYEVGLERIKHYKKMQDGKWWSITHTNKQK