Scaffold Ga0209596_1000706

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000706
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30814
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (10.91%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F021301	Metagenome / Metatranscriptome	219	N
F031025	Metagenome / Metatranscriptome	183	N
F038673	Metagenome / Metatranscriptome	165	N
F039104	Metagenome / Metatranscriptome	164	Y
F045761	Metagenome	152	N
F068841	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100070624	F031025	N/A	MESYVSNNWNFADTSPSGCVDSFSDYSVEFGYEYSPSATGTITEYLNLTSATGTIWNAALNPFDLVTYAQAQYLATSSSAKFLTNVRTRYIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPVGSQLTIPGGATFFDVVLKLGGTAKSETYRINIKDECSKYETTDIFFMNRLGGFDSFRFNMVRRDTFEVERKQFQSNPYTLGATYGYATSVRTRSNYHTKASQKIKLNSNWIDDTESAWLKDLIESPVVYMYDGTLYAVNIDNATYEQKKGVQDKMFNLELDITLSFADKSQRL
Ga0209596_100070627	F021301	N/A	MNWKNITIHQLQEIHSCRDMSDLERQMNILAIALNLSMDEVESMTLDKLTTEFAKLSFLNDLPKAPIQFMFKLRGRYFKLAKTPNEMCGHHFIELQQVFNGDVIESLNKIVALLSIEVDFFGRNKKVVDAQAHYEDKCALMMHLPVPLPYTYALFFLEVYPELLKNILCSLKEEMKDMTEQLTNPQ
Ga0209596_100070645	F039104	N/A	MIKALVVRATINNIVKWRVYFAGELLATFENEGDARDYAEFIDQ
Ga0209596_100070646	F045761	N/A	MIQNYLIIGMAILFVITLLQLHKTTEREDELLETISNKNRLIWDYETELLEIRSKIQEANDRAKTWELQATFLKNKYDDKSIGS
Ga0209596_100070652	F068841	GGAGG	MIELAINGWILTVQGRICEEKYVYTIEAVDNWLIANHIEELHDYLNSTTSGFGDCCIKEFDGINSEAFFNAEPTKFQVLFMIGQRTNFL
Ga0209596_100070654	F002909	N/A	VAQIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFIPGTITKSPTSINTILLAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKTAEGQTYDSLAKAIAKKIHRSGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
Ga0209596_100070655	F038673	N/A	SLKPKKNNRPKVLLCRMWFLLFLIPLTSNGQVLVDTCVIQEANHYLVKGAIARRQVTILRKIVTSDSVIIDQQDSIIGKQKTNIGYLKDDNNALVKRNKAISRTLISYKMLSVVLTILSVVMWLK