Scaffold Ga0209596_1000674

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000674
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31480
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (73.58%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001713	Metagenome	648	Y
F001799	Metagenome / Metatranscriptome	632	Y
F002099	Metagenome / Metatranscriptome	593	Y
F002487	Metagenome / Metatranscriptome	554	Y
F035670	Metagenome	171	Y
F060706	Metagenome	132	Y
F067527	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100067415	F002487	N/A	MTKLTRQDAIQDLQGTYCCYCAELKTSGSCCHENHFVPFEDLYEEDKEAMIQEYLSEGN
Ga0209596_10006742	F002099	N/A	LGYAVKWIAALVLVLALNSTSKDLCSVREFYSIAWGIHDPTERHKQMAEWLTKHQHLCKSTDFSVIWNNLAEWGGTSDSHNLRALVISGYKTALEREKK
Ga0209596_100067423	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMEYERDEEGTYNENIDEVWFEGRNVMGIFTDQQFKELEIEGCMRLQKHILEQADEAKIAAYE
Ga0209596_100067424	F035670	AGG	MTNLNIFEKAMGWRKRQMVTTQVGRNEIVKKIRNDTLEEVAKEFDKMKGFGNTSQSFATFVRDMKHE
Ga0209596_10006743	F067527	GGA	VIIPSKWFPSVQPKYDFQTVVFDKAVEKVQEDYKLAMKAHKIEIKIEELEVELYNKKARVNQLELTMFTNRKLDFYV
Ga0209596_100067431	F060706	GGAG	MSKLARDDNGQLSQIYNLGTTQVMTVTASSVQSTAIASDCTIIRLANGSAAHCHFQIGTNPTASLTTSPMLPPSAVEYIKVTGGDKVAVIRGATATDVSITQVN
Ga0209596_100067438	F001799	GGA	MDKHLVAKWARNLLDDDFFIEVIDNLKKEQISVIINTSAEESDRREDAYRHIKTIQLITGHLEGLASETVIRDKKWKIL
Ga0209596_10006747	F000166	AGG	MSNIPTPEHSELFAQSVRKWQQILSLCDWRIEKGSKPAKEAMASVEFNQTARLATYRLGDFGAEKITPESLDKTALHELLHVFLYDLLCVATDPKSSDEDIEMQEHRVINLLEKLLSKDSNGRT