Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1000615 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1000615 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32802
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (11.76%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

32802

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (11.76%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N
F019965	Metagenome	226	N
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100061512	F009004	N/A	MKTEFSKVLDFLEVQQQENKYSENQLHLIIQTLCIFLDDEQLHEVERLFNQFKK
Ga0209596_100061517	F007860	N/A	MKSNYLAGLYFIAGFLTSFSLICQGTELYINFAGLTLFFYLTFSLTEALEDLGL
Ga0209596_10006152	F005814	N/A	MELDLLSSKINLNHTCLKLQVSIEDIKAKNPHRTDLINSMEQSLHEIKKAMLVYERLEKEFRVTRQINFDLQHINLELKQDVKDLKKIIEFNNLEL
Ga0209596_100061536	F019965	GGA	MNDLQIMIQAVQIYIYQKKGVRVQIYLRNIHDINLLKQAYDYIQKNQNNKTANN
Ga0209596_100061544	F014573	N/A	MWIQDEQLRKEVNKLLKFKTRNSIVKEIQEEGNKFHFFQLTNFLEGKDVSLSTLKKIDFFVNK
Ga0209596_10006156	F006463	N/A	MNTGTIYDQLDWWQRQWRGSFDLMLYLEICRIKKNENQKFKPMKRYKATFKTWAYVGAPMKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK
Ga0209596_10006157	F009958	N/A	MENRNLEFWKKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEISQKWETETDDNLQPHVLGVRILEDLRLEMQEAINSALQHYNFWEWKTSNDDSNYNFYHEL
Ga0209596_10006158	F034772	N/A	MKNLIDYFTPRTKEHKDFLLCFLSALTVFFILANMFYCLMYLKAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1000615

Overview

Ecosystem & Geography

Associated Families

Sequences