Scaffold Ga0209596_1000600

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000600
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33135
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (38.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004740	Metagenome	425	Y
F011740	Metagenome	287	N
F012434	Metagenome	280	Y
F016125	Metagenome	249	N
F016936	Metagenome / Metatranscriptome	243	Y
F017799	Metagenome	238	N
F024061	Metagenome / Metatranscriptome	207	N
F026503	Metagenome	197	N
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10006001	F011740	N/A	VNSITTADRLRNCVTTYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEDTGRTRQALHYEWAHEVAKVRIVFPELAQLMADYRQSTDKPELEDA
Ga0209596_100060010	F059946	N/A	MNKRKSDEGKRIQCDAMLAQFTPVKTIAMALRMSRGTVSERAKRAGMHRHYITEAEVRLLFKHRVGGGAK
Ga0209596_100060014	F024061	AGGAGG	MNAGEIKNTAVINNATEQFRSLLETHFIAIARAAEESFVEDDAQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETEAMVDPLQSKLGLVEDAK
Ga0209596_100060016	F016936	GGAGG	MTLDLIHAELVRIREAIESRPYALGAPAAKPAAPRSEEVPLPTEIIPNAGDVQVHFGKNKGVALSTLGDRSVAWYAQEPEPRLGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAVVAKVIEAVSMVHDENVPF
Ga0209596_10006002	F017799	AGGCGG	METTNGNDQRELEALRFSSRASRAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMSLQGMDAIEITPELRKLIYNPVGDLT
Ga0209596_100060020	F012434	AGGAGG	MSTTTALTRALVLAILAPDQSRADRAIALAESIAAGCTTKQVATAKRNAAKLLRA
Ga0209596_100060032	F026503	GAGG	MIDIETSFSRLEYQLARLANAAKVDLGLVIKEEAKYAIQTIVKFTPPKSKQQGANAVRADFSRLAEPLVFQDLEAKATKGGFYKSMARYVRNRDVEKLRALFRNPNLTHYYGRPLLENEDAIRKYKKEQQTPWRRIKGKPRVLAFGSDFRRVRAMMEDRVGWTVSGWNSSAKVTGARYKKFSDKLKAQAGGNIRFGSVQSSFGPQPFIKATAHNVKIPNYQRMIDAAINSRVRTTAKKVAAVLANRAINLGFTRVGGAMPIKTAAA
Ga0209596_100060033	F016125	N/A	MAAVRDFDSTQINSDFSAILEQAGVSFTYQGASITGVWSSSRDAFSEFEDQRRTDSKFTIFLLTSSVSATPQVTQTLSRASITYFIERVTLDAEGAGCEIEVCKSI
Ga0209596_100060046	F004740	GAG	MLDNPFLGLESATLTALKTKTIDAIQAVLLNQSYSLNGKSVSRADLNALNNMLGNLQDALTNAAGTSTDTTFVSFTGN