Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1000598 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1000598 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33141
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (74.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

33141

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (74.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003408	Metagenome / Metatranscriptome	488	Y
F070122	Metagenome	123	N
F103268	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100059834	F001106	AGGAG	MSFDTLKVAELKIVAEDFAVDTEGLKNKKDIIAALSEEGVSWSVYQKTKQEIEDNLEEIEIIPRLDPKKVDADSILVRMTRENYRYDIHSHTFTKEHPFVAMTEEDAQKIFDTEEGFRLATPKEVQDFYH
Ga0209596_100059836	F070122	GGA	MSLATSLMPLHLDIYLQSDTQDVNTGAIKKEWSYSKTMQCSAKGIISNSGTGRGGDRQTLNTKYTNEQMLEIRSVDQITYRDKITNIRDIKGNIVWKELDFPSETPTVFEVISSTPITDPFGNVLAYNSIVKRSENQQIGI
Ga0209596_100059838	F103268	GGAGG	MTDYNIDAMYEIRKHLWAELILNNVFNESDYYSDNIGKEIIPIIPVQQQPELNQFLSGKKHIVYDKIGLSYEENWMICCEQMIFTIYATNFSEVNEIRNLMVDVFRRMDDSAKDLNASKSTPKIKFFNTMVVEISPTEPSQELQGFLSADVILEVKYARSTDGRGRFN
Ga0209596_100059842	F003408	N/A	MPELIQTFKSMQKSESEKRKFLASIQGIDLGQEENESSTTFEDVQRRALGITTSANDVVSLQGQFAAQAGFGIGAGLGYSKE
Ga0209596_10005985	F002489	AGG	MSENKQEPSNLEDNIPMVTYIMLHRIYDLLTLISNKIAGSEDTSKIIEYHEQGYLLGPSPSYTPGEEDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1000598

Overview

Ecosystem & Geography

Associated Families

Sequences