Scaffold Ga0209596_1000588

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000588
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33608
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062767	Metagenome	130	N
F067748	Metagenome	125	N
F072351	Metagenome / Metatranscriptome	121	N
F082706	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100058814	F082706	N/A	MEELIGQLFSTLMDRQIREGKLEYIECAREKAEELEYHFENEYPTKLLLTQHPSEEPWMKDYRRRRWQAPTTTATGRVFNFLQKIQQADDFKITFESDFKKTGVAERIGLQDNTLQFYVENALPKFGSLETWSFNVFLKTYLQDSNAIVAVLPYYEDFVKNPAGVTTLDWLRPYPQTIFSEDLIFEEETFVIIKAEYYEDMNRKKWDQFLCITMEGLVLFRQVNEYTYDNPFQIFILPYQFSYLPVVKVGSVIYEEEDGHLVFDSVLAPCLPAWNEVLFRTDDLNILWATHALPQKWALKMSPCKTCNGTGQRTNRKEERVGCNDCQGSGRASSSPFGLMEINIDRVSAVNPNPIVPPVPPAGYIERPTETVRLFQEDIIQKEFQGFKAIGLELLGQIPAAQSGIAKEYDRKELNTFCYSVTVHLAQVYTKVCFHILYQRYNSLFASSLMDSDKVKAALPQITVPTDFDVMTTDMIGEMLTKARQGNFDPLIISGIENDYVEKLYGENSIQQAYLKILKQLDPLPYKTIDEKTLLLNSQGCSLQDYVLSANLPAFVMQLVDENAMWYDLPIQAQRVQVEAMAAAKVSTIKSGVVPIMPQG
Ga0209596_100058840	F072351	N/A	MSLSTANICPAILTSLSDNLINNPANVAIHGGTLAALNDPSNLRSGQIIRQANDNGTGTSREVRVTFKQRQIASDAVDTKNCTPGEQMNYIESTFQVNNYRGVSFTLSEAQLRTYCAAYSELVTLTGSTDPNQIVTRANAIGAAGGALSVVREMFIDFQLSANALVQAMNADLLASISGSVGNWYGGASNPTYVVEGTDGSIYAAGLFGMKQNYMNTGFNGSPIIVGGAGALQRVWMNDSRYFGQGANGINFSTVRDNTGLAEFYFDTNAAAALTDEDSAVVFAPGSLVYTPYLQYVGSYGQIGVMNRFTMPIPGLPQVKCDVRILPDECNETYAVWMECYFDVFAAPTTLFPAGDSNEGVNGIFTAQFTTAA
Ga0209596_100058844	F062767	N/A	MTLTKVTVESAIADLCHNLAATYPGNQMLNYGEAVESIIENQAGNYVTKDGTTYCAVNDGYKLVMFLVRESASVQQQPAGGRANSLLRTVTIKLVSNTTLESAEFAITSIINRTKGITYESTDYDSKAIARQFFGLEERNFETAFFSINLSINERISCEVTC
Ga0209596_10005887	F067748	N/A	MNCLQNYIGLQGCTADAPLSGIYINDYPGMSSELMEKIATPEQASYIGMWNSAQAVSYLRIKRDIQLALFQSAEAQLDQVLFQTSKNFVQQWQQIQTVPQEAILKGAFVSIQGSKYLSLRIKQLLVYNAGSQTVTNCPWFIYQTQDGSILDQGTYDLAPGMNYVPINNEFYSDFDKINIMAAVDCTNLETTTGMFVDWGWNQMELECATRFTYLWRNGWSIFPVTAPLGYGFGDSWSQDNSQSGVYMDAQLLCSLDSFICQQKEFLVDAWANLLCYQILWAKVASPRANYFSQGNREFTERAMATFLDGYNQSLAIWARQLNLRGEGLCFNCDNAGLIQQGFVRP