Scaffold Ga0209596_1000555

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000555
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34546
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (20.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022372	Metagenome / Metatranscriptome	214	Y
F078391	Metagenome	116	N
F095140	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100055551	F095140	N/A	MNTKNLAGYGSIVMSLLTALAAAPYSLGEVATIIPPEWKQRVFIAGAIATLLLRVIRDNTTPTQPTP
Ga0209596_100055552	F078391	N/A	MNDLLPAMGRFFANEWDGFYQRVTVNVSVTTLGILTPLVHAELNMWLQTTMYVSGLIVLVWNFWGAQKELKRKRLRDEEAAAEWMRVAKAESHFPKRKPGDSHEL
Ga0209596_100055553	F022372	N/A	MSTTTITIDVAFLTTEQRDAATLLFARSGGWNPVVDGNPNPVTAENYGVEMLAKYLRRGVSDQSTLDAQIAAAQAVANLLAGVSVTTPAEFNALFPTPPIVTPV