Scaffold Ga0209596_1000511

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000511
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35599
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (75.86%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003304	Metagenome	494	N
F010449	Metagenome / Metatranscriptome	303	N
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F037193	Metagenome / Metatranscriptome	168	Y
F058800	Metagenome	134	Y
F073257	Metagenome / Metatranscriptome	120	N
F102823	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100051123	F058800	N/A	MKQTLSKLFYFLGDTISRTLLRTGIGYGLYKTFMLWSIELDEKFDVWKEVKPRRRKKK
Ga0209596_100051124	F003304	GGAGG	MKQALVTQSFGDDWKNIIDLTRPRMEAYCKRHNTDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPKFYVNTGVFVVHSKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLANQIQADDAKLVELGR
Ga0209596_100051126	F022371	AGGA	MFCLVEIADIAWVIASFVLYSSLLLSALYCALFIIFKLIDYIKKELDL
Ga0209596_100051127	F020665	AGGA	MRKRKAGKHIKLLKVEEYDAVKITVNVDDDLYEAMAEAGRQHIVKDKMACFEYALNQSLLELSKEIK
Ga0209596_10005113	F010449	GGGGG	MSEDQIWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN
Ga0209596_100051133	F037193	AGGA	MKSKDEIAMQVKKEWDNQNLRWKLWVEAGGFRTEIFCYSSAEEEYSKCVKELVDQAYKMQSI
Ga0209596_100051135	F102823	AGG	MSALYDWIIVGAGLAIGKLLVAIAVITAITAILAVLFIIEEKTK
Ga0209596_100051138	F073257	AGG	MSNTESTKHKFYYGEETYTICVTKDDWWLEESVDMSELMMKCGEEFALDHGMMPPEGLCVECWKGKYLDVVEDYYIGGTTIKDLDLRRCYKCKHTVLPWQSADRVDEVLEALKKPAELCPTCRKSNTIEFTGDLKMDSVCKLNGEPFTAPNITRTQCPVCKDEFFTMSELKKIDAAIREEQSRLGIQP
Ga0209596_10005116	F000635	GAGG	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRSNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0209596_10005118	F002149	GGA	MTAIEYIEQSNVPEAMWPNLAEWFGWFEKQGMVGIVEDKDGIAGVALARCIKDGQEPKHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV