Scaffold Ga0209596_1000480

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000480
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36685
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (47.89%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010897	Metagenome / Metatranscriptome	297	Y
F020649	Metagenome / Metatranscriptome	222	Y
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F034466	Metagenome / Metatranscriptome	174	Y
F035200	Metagenome / Metatranscriptome	172	Y
F080893	Metagenome / Metatranscriptome	114	Y
F086551	Metagenome / Metatranscriptome	110	N
F093196	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100048011	F025679	AGG	MTKTFKIGEYAVGGTIRVSIPKTFTTIKIDIIDSNYNTKKLVNQYIYYSFDRIRIDRDLFQITSSYWSDKILSWIHKAWHPHLAKI
Ga0209596_100048015	F010897	N/A	MKLINRTFLCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKRGWHGRAWGSMRVHVGVPEYKKYVKVYKSGGFRGYLSIHTYSWEESLIELISHELRHLYQFKKGKFYHGIKKIRKYNIGTKAKLCEVDASLYAKRKVREYRKDNIKFGLSI
Ga0209596_100048021	F035200	GGAGG	MNLKYIVLRDGIRVSYDMHNSLEEAEAEANHWRAIIKRWPDGTKVVIKKIGE
Ga0209596_100048025	F007359	N/A	MTLIKQNLGAHWVIGMKGKVDDIEQFHNRIYNWGGTNGSIQWMSESFGYFWITMEKLERVMFKYMLNGMSDKLGKKFRGKKGGMKAVAMHRMKTAIANIPVESFMHTAEAQDFYSIGTISAEKLDTDS
Ga0209596_100048036	F024954	N/A	MKFNSKKYLAKNSICDKLNSMKDKEMKNTIESLVVGKYYQIENHIAICEMLNSTSNKKCLSRISGVGSVLAFYDELTEVKMTPELLKQCEERKNGTMNFIGSFNESSKYKGD
Ga0209596_100048037	F086551	N/A	MKMKERINKMNIQINPELYENKNIYRYGHEKLLVKLFPSTIGWKTMTATAEILEGEDKGKWTTIYLRSGLYNVDTGSLVWYR
Ga0209596_100048040	F024058	N/A	MTHRMINWNFQRKQMRENMRKNMDTTESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK
Ga0209596_100048051	F080893	N/A	MNKTIKITQQNIFEGEMANPQNCAIARAIKRNMKGKLMSVSVLPSHVTLKINNKMFFAKMPKIGAAFIKRFDHSETVNPFELNLKFKKSYSLV
Ga0209596_100048059	F034466	GGA	MRNLLLSSYEKSLPSKRDTEAFITNFHQYRAKKKAQEKTHYALIFACVLILSMIGSIIAKQTKNNLDIQTASGIEKCNTQVMEK
Ga0209596_100048061	F093196	N/A	MNKIPFIVGVCIAISIFYTVYSPHASLVKQQIDNYGMDFEYVTDEGSCFTQRAEPIGHDSHKYVLSLGKSAKPTNAEEPLYVMVGYTMKQIRLKNKSNVFQTPIYKTL
Ga0209596_100048063	F020649	N/A	MLLKIKNWWANLKSYDKFFFITFVPAILFTLWGLSDLYINYFDLLSREDHLQFFLRFAFPISLATLITVLERNKRKKLIKDIKTYLDE