Scaffold Ga0209596_1000402

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000402
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40171
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (86.15%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001538	Metagenome / Metatranscriptome	674	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004432	Metagenome / Metatranscriptome	438	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F017628	Metagenome / Metatranscriptome	239	Y
F079997	Metagenome	115	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10004021	F017628	AGGA	MATYDIDALKVDLPSAKELAQFVYDKTDGVVSLDLIGKPKEEQYIVAKNALEGKKVPAEYMTGFNPYVDKKDVIPEDPLRKMPKRSIDLPDEESQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQIT
Ga0209596_100040219	F079997	AGGA	MMPQIDIGARFANHRFKLCTKCDISKPPEGGIDMGHKWICQMCWNKRITGKYFKQNQEKN
Ga0209596_100040240	F004432	N/A	MVTKKTPAKVAPVKRSVAKPKPTIALPSSKIQTKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILHAITTQDKMPQLAKQENLIAPARSLLKDLDGIVLLIHKANLSTNSRTTILALNADGSREKSIEGSITSLFNASADRNSAMVAMLNGEILCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKNKPEDIAALKTRINLAATDMSED
Ga0209596_100040241	F001538	GAGG	MIDTIKLFPTVQPSGYPDRHDLAQAKLEKQHEMNKANELAKQKQTQLQDIAFEIYTKKVVQERLRMEIFTNRKLDILV
Ga0209596_10004025	F098944	AGG	MFEEIRPEGSTVTSEEIKKKARDYAKAKRAQNKAMKLATGQIEPKEAVETIPVDEFDMTAFVPRSQKAAGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFMESLRKS
Ga0209596_100040257	F000857	GGAG	MELNLNNEEAKVNEDYYIGGVLSGGLEGALIKNDKMFNEVKSGTWSQTFSTPNMNYKVGAIDGERYVQYEQKNVESVKQYCKERREFYKMIGTTDNPLFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK
Ga0209596_10004026	F001915	AGGA	MEWTLAHPLHDVDDIVNMADSVFGHEADGILTRDKAVFRKNVTIATTVQLFDRSKEFIAVCRGPKVIDTFLGQAEVNDALLAYCWFDRGGYTTYANEEISNAKFHHVDLQLSPRLRVRLINEMIDQHILWADRWYIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGMECLKK
Ga0209596_100040261	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKTQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETASKVELNKAKVQESGSVTALNIRKAQDIDTDDMFEALAAKKGKLSAVQVD
Ga0209596_100040263	F006264	N/A	MEDPSNIFQSKLSSQAEVCARKTLEWLQKDLQGERKLQPDEVYWLSYAAHTLLNIRDSYGKK
Ga0209596_100040264	F001059	AGGA	MATYDIDALKADLPTAKELAQFVYDKTDALVSLDLIGKPKEEQYIVAKNALEGKKVPAEYLTGFNPYVDKKDTIPEDPLRKMPKRSIDLPDEEAQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKVPFGEKLNKYGQTVPEKYTWIDPRTEERVLRNPDGTFTKDGRGVHTFLIGEKGGGVWSMIDKDVVSISAKNISDPWA