Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1000241 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1000241 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50789
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (42.55%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

50789

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (42.55%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002267	Metagenome / Metatranscriptome	576	Y
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100024128	F002267	GGAG	MAITIGAGIEIGPGVTVTQGFLPSLTLVYDLDAANYAALPANGSVVAGTGAYTITVSNTTSRLSWGSANGGVFSFTGAGASTTDTMYGGPNYVTGQSYSVFMAYQRTTGIDGRLLNTQNEVVKDWLMGLYNGNPNTFYPNGSVNLPATGADLVWHFGWATLNISTGVGQIWGATSAQPTAYLFTATNAAFGGFNQLRLFSRAAGTEPQTANVGFVKVYNGVLTTADIQGLYAQYKSRFGY
Ga0209596_10002416	F006099	AGGA	MTSARILYLARYRVPHAIMSLQPEFANNLVGIDRTCIASPVPQEELWPLFEKYGIDTAKLDYAPDSEIYRLYPEVNNWVFEGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIKPYEPMKNGVLNFQVLENERHSWGYYESIKNGLGFERLTPHCFISENVPVLKQDFTDLTQFLEERHQKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWTMSRRPITQEFQRRYHYDDMEKIGDFDPAYHTAVCDAVPDLRFSLQMDWDRKEVVKFDYYMDKIRETLAQLT
Ga0209596_10002418	F004863	GAG	MKLMVAGCSFSAVSKTLPGTAWSERLAQRLGWDLVNLARQGCSNGGIRIQIDEIRRQQPDLAIIGPTFWDRMEIPADSAPYDWSQAPSSGENPPLERHLQDRNRGNGYRREDGIRNVNYGREPSNMICETIFTLAENYDHPYRQGRITKQAQNGVRYWIDSIYDNAWKKQQDEWIMREGLLMMLLDNIKFIVLPNLLWPFDPAMPTQWRDAFPAIIPDHYIQLDPQKTPQAICGNNRFSGEDPGYHSSPEGQQIIADNFYQHWITHFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1000241

Overview

Ecosystem & Geography

Associated Families

Sequences