Scaffold Ga0209596_1000172

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000172
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58725
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (73.00%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F006261	Metagenome / Metatranscriptome	377	Y
F011482	Metagenome / Metatranscriptome	290	Y
F014841	Metagenome / Metatranscriptome	259	Y
F027488	Metagenome	194	N
F036203	Metagenome	170	Y
F042308	Metagenome / Metatranscriptome	158	Y
F042324	Metagenome / Metatranscriptome	158	Y
F043922	Metagenome	155	Y
F054812	Metagenome / Metatranscriptome	139	Y
F072277	Metagenome	121	Y
F096619	Metagenome / Metatranscriptome	104	N
F105048	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100017211	F054812	AGG	MNEQEVNERFDNLVKPQVVKEKKEPAKFPELRYLWGVVLLGSFVLVVLSAVITTVIEAL
Ga0209596_100017219	F042308	AGGCGG	MGWDVTQVSSRFTTKQFINWYLKSTYDGIYEPVKIFEGKNEFGQKAFYVALKKLEDNSIFACVILTKRKNGSVAVKVLGESEEPLYYEAPKSFIDVLTPASTYSGAWWRNRCLEKYLEKEDA
Ga0209596_100017234	F027488	GGAGG	VSIRWITKVWADSPYDGTRLLIHLALADISHDDGRFFASQTNLSTKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLLWKKLPNYVGEEQSLGDVELPNSDTHNSPTLEVSLPNSTPYHPSYTSVLSTTKSDETAIAVIAVSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRNYTAEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIDLAEKFRNESI
Ga0209596_100017238	F011482	GAGG	MSEEVKPSLGEIMRRLDDLTMEVKQMNLNVSQTYLRKDVYDSDSERVTQAMNHITDRLEKMESRSEWVIRTVGALFICTVVGASMYVGQVIGL
Ga0209596_100017243	F006261	GAGG	MATISSGYTSSSPILVPNPLSWSFVAPDDDNIKVVGVKVQQPLSQTIVEAYGVFKPLGASKSVVVAQSIYGIDGTYEITVQGEDAWDELYPVLVYQGTLLVRDPLARLKYVRFVDRNWTESGNIDSLIRVVKVTYFEVDAP
Ga0209596_100017254	F036203	GAG	MAETQQPMSSNDAGNVTGSSSRVQRARGVSDAQGVNPKINQDDFFRDLDSLVGFDRQQTGCSIGRLVAKLDEPLRSKLNEIMRNEKVNSARLGEVMLAYGLQVSSSDVLRRHRRRLLGKDGCKCPNES
Ga0209596_10001726	F004793	AGGAGG	MTIEEAKKIVGNQPTWALKNMVKALQMLPWRNTAEDLERLTAAKIVLKHRK
Ga0209596_100017268	F096619	AGGAG	MAINHAIVSVGTSATLLTVAASGGGKDGSTILVQNPSGGVAVYLGGAGVTSSAYGFILAAGTNIAIELNQDEALYGAVASSTQSVAVLRQGV
Ga0209596_100017278	F043922	N/A	MNRREKQKAIQEAYSKWSEKVEFTSETGASNEDESKIMEEISTILQGNKPQ
Ga0209596_100017284	F042324	AGG	MAWTDFFTKELAGSKVVVDSNGKPFVSQEIALKEYVEIELNIQRDALPYNIYFRRFDAIGGELENRLFAQVGDRDLALKSALGITNKRINSFELVSDGE
Ga0209596_100017288	F014841	N/A	MGSEEQKKPSAIDNALAEIGRVAFMEPAICTGWVLVSEWMGDGIKDYWTLTLADDQNPDWRHLGLVHHGLKYWEGNDDIGLRDK
Ga0209596_100017291	F105048	N/A	MILLSWLRGNKPLRVSEGSLRAIRRAQLDKTLAEEADKQRARKMARFSLISKPQ
Ga0209596_100017298	F072277	N/A	VESERRTDMKCVKCGVAVGKMEVFQGGVCLQCYAVEFEKEFQSALKIARLK