Scaffold Ga0209596_1000163

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000163
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59940
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (70.19%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F008244	Metagenome / Metatranscriptome	336	Y
F016150	Metagenome / Metatranscriptome	249	Y
F019833	Metagenome	227	Y
F035769	Metagenome / Metatranscriptome	171	Y
F037225	Metagenome	168	Y
F045098	Metagenome	153	N
F080043	Metagenome	115	Y
F084240	Metagenome	112	Y
F090402	Metagenome	108	Y
F099305	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_1000163101	F080043	AGG	MARKKIQLAEVNSLPTVVKGSHLTVTTYPNGRTELEWDDDALAREVSEAIRSAELANMKPAVRAKSKKSVVKTK
Ga0209596_100016312	F084240	AGGAG	MSWFKHKPRTKTSPKLYPHHSSPIAEKILKETKLEVTGAKDIDKKKKK
Ga0209596_100016313	F045098	N/A	MTSRELQQMYQQWCQGNDNYGHRWLDFVELAAIYFKQPESEVIRELQKHYWFVKNNK
Ga0209596_100016314	F001009	AGG	MASNLNSEFNYRYQVIGSTPWEKIKTLQGFYVGRTRAAVLEECAELKYQAKLEEMKHLKTVPALPHILLNLQAEILELESHLEDQRHAFELNRKEIKILEKYMAELYAEVEPTRLKHEDGTPYTDDEMFEANANYEFTVTVGREIQSEIIALGRPSPAKLLNAMSNPQTLNALMQIGLVPQGTVLLEQKDIMLELTNQSPSDNSIHTNEVQTIESSANDNNMV
Ga0209596_100016326	F090402	AGGA	MIFNVLATLFFGYLLVTKDYTGSPKWMYYTDGIVFAINFAIVFKYLTEMIGF
Ga0209596_100016356	F037225	GGAG	MNNYIEKLFKQAKGYVETDDKGNRSTYTYDFDPDMFANLIIKNCIQTLVNHGYTDAATVLETEYAEDWQLYQFPEI
Ga0209596_100016364	F035769	N/A	MKKILGILLVFLGFSTDTYGTELEKYIVGRNPQDIGDIERLTYEFHRKQSNWRFL
Ga0209596_100016365	F008244	AGGAG	MFNTATYAFIDGVSDFKKKLVEQTVQHEGIKTAMNSFVDAQTKYTKQAADAGMQSMMALGMIFTSKDFYTEMGDQFKTMVPAFNTKKAKK
Ga0209596_100016368	F016150	AGG	MTEEKKSKNPFINLANAAKKDSKHPGLGKAPKSQGPKPTKGNGGATVVRRSGRGG
Ga0209596_100016371	F099305	N/A	MIHIKRFVDKVTLIEGKQGRDVVIPISEARGLRDELTKLLADNYELLHNTTKIEPVFQVEMNGGRF
Ga0209596_100016390	F019833	AGG	MYELRYLVLNGHSENEKVLQYRTQSEVTDYSTTTLKGSFTTKKEWTEWQDVPTVNETK