Scaffold Ga0209596_1000132

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000132
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64988
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (85.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006979	Metagenome / Metatranscriptome	360	Y
F008806	Metagenome	327	Y
F009741	Metagenome / Metatranscriptome	313	Y
F010448	Metagenome / Metatranscriptome	303	Y
F014843	Metagenome / Metatranscriptome	259	Y
F019092	Metagenome / Metatranscriptome	231	Y
F025484	Metagenome / Metatranscriptome	201	Y
F035737	Metagenome / Metatranscriptome	171	Y
F055682	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100013224	F006979	AGGCGG	MAKTIKVAGEKHTIKKNKRGEVIVDHAGNKGKYDKINLTKKAGSKTIAQGVKATKDWHKNNG
Ga0209596_100013230	F008806	GGA	MSFLLDEDEALRNLLKDMTVTDQKSVTEEGATRNVGVWFGQPDQEIRNQSYPYITIDMIDLSEDIQRAMRGRVKPSYLTNPTDQVEGTQSVQGVSYDDEIHDWDINYPIPVNIDYQITTYARQPRHDRQILAQLLYTKIPLRFAVLNTGPNTSAGTTRRLDVLDISKRDITEQGKRLFVNAITVRISSEIAPETYNQLYKTLELNVTGTTGTQVIGRGQFTTIDTYTQSAP
Ga0209596_100013249	F055682	N/A	MAGCTRLKTGNQGTTIYNIHELSSLKKHWLLKNSNIPRRFIGLDTKDIIDRAGSIPQEVTTWIDDCVNGHVIKQVGNIGINGVGLLFDGGPGIGKTTHAVVAAMEFLRRLPDNDVEAAKVLGMNSADYGLNARPIYYMTYPEFLSRKKATFDADLEDKREMNYIVDGFHGRSKFDWLNVRVLVIDDLGKEYGSKYDDTSFDEILRLRYDKALPTIVTTNVRLEDWEAQYKEAMASFANEAFVRVPIVGADQRSAL
Ga0209596_100013251	F010448	GAG	MKNGDISNVSSPQVVCVTDVVIGLVEEETKRLLSKKTKTKLGEINLQNANKLWILSNNYGISLELAGYGDLGWTEELLEEAFDTLEQEVVNPFNYWHLYADVGELVRKLPYRANLRGIVDVPGRVAMYGSAGVEIDNL
Ga0209596_100013262	F035737	GGAG	MSKSFNVNDQAWAHDLEKGVEAYTDMLFEAVWDANDVEIVETLSGEPFCGCSPCFWREALFYIVPKIIEGYEEGKIELED
Ga0209596_100013276	F009741	GAGG	MTQPVDGVYDHTKPWRAPLKPDLVAKRYQYNGPWASNMERLTQQALMVMNIPGKDIQEMVRPPLPQIRLFPDRFGYGDRSQPGIDDIVSVDRNYVEPRVSWYSGGVSGFQAASRNGLESN
Ga0209596_100013278	F025484	GAGG	MDDGDGMITMELQARQIADNATKYNGSTPCPTCGVVMNPVEFMANRGHCLSCVTQRNAKRVKGKMA
Ga0209596_100013285	F019092	AGGAG	MSNIPLLGQKESPANEPMFRLLHCLVCGTLDELPPYDGDPELDHLLAIACEPHVFPSGEPHKGKLFVLPIRAWAKLESKKEIIRQIKDGGSKGLAEIDDSFYDSRSTFLEGAMECYGRHNKPKDGCVDWHSKEKLLIPKTVKERKAEGMARYQDEAGPKTYLCDFCPVSVAVNHRKQKLLGI
Ga0209596_100013288	F014843	AGGA	LNILVSLDGVLSSDSGDPIRAGVMLYYALNINNRVAIMTSRKEEDAKHWLNSHGIINYDDLIDYSFNLEGEDLKKRQFVLSRSRAPIEMYVDSDPAMCAWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRQWDQIEESINRVNVARSEAAAHPKQLEFWDD