Scaffold Ga0209596_1000018

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000018
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 168221
• Total Scaffold Genes: 255
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (38.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001040	Metagenome / Metatranscriptome	795	Y
F013139	Metagenome / Metatranscriptome	274	Y
F040622	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_1000018130	F001040	N/A	MAAPRTKYEMFAEIRYAGRLIDVLDRIRAIRLVLMVHIEQDLGQDRELIKIKVMTPYPPKETFHAIRRLSLGKIEALRDMSLRESTLTKLL
Ga0209596_1000018137	F040622	N/A	MMENVGYNMDTPNLKRILETILDGQPKPMSIDEKREFVNAVKNFSALGESVYGKGDLDSICERVKTIVEKAEKIMTESDDWFSDVAHKKNFKRIQEDYSMFEATAREMKQLQERLSMAYENIGQGLSRYYDVQ
Ga0209596_100001830	F013139	N/A	MNTHRPQSNGRVVTMPVYVSNHITDEMLELFLQSGEAMTINAGKLSEQVVLPYLENYFNCKGQVVDADGYDHVFGDIRNEHKKLAIRKTSAAAKNIGENKRGKCDTISFHHATANAIYVIDSNTFYENAILNYDKTGNCFDVNFYNDMQLMGKGKRIGCNAWKNTEMLLKYSEKIAL