Scaffold Ga0209192_10201601

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10201601
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 758
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044589	Metagenome	154	Y
F096031	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_102016011	F096031	AGGA	MSRGVLLFCFDTEHTRYHKILERCVRLVKRNICKE
Ga0209192_102016013	F044589	N/A	ILQMQYVELQPNSVLPIHKDDFTYEDGKHIIDGPTQLYCVLSGDPGGIKFKFKNVGLIDVSKPIFINNRRFVHSLVYTGDIPRGVLLAYGIRQPR