NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10075161

Scaffold Ga0209192_10075161


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10075161 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1448
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038091Metagenome166N
F050682Metagenome / Metatranscriptome145N
F064106Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_100751611F064106AGGAGMQTTQNTVTQAQALQHCAQQLQYVTDAANKHTYCINTAQEIVHVLQQLLSANANYAAIVAATRYSNDEVNEEKYL
Ga0209192_100751612F050682GGAMQNTKYENVVIATIQNLAALVSNAAHDSIVEKNDYSITDNVQALRFVYANYTQHTSVASLAAAALNSKMDTAVRENVHAQLTFIN
Ga0209192_100751614F038091N/AMQKNITSTNTLIVTNPIMSPLFTAQLITAASYNKLCAQTQADISVVAYSKQAYSRAMLSNVTAQANTNVVYNVTKNLSYSIAV

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