Scaffold Ga0209192_10058311

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10058311
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1706
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064106	Metagenome	129	Y
F101904	Metagenome	102	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_100583111	F064106	AGGAG	MQTTQNTVTQAQALQHCAQQLQYVTDATNKHTFCINTANELATVIQQLLNTTTNFAATVANMRYSNDEVNEEKYL
Ga0209192_100583112	F103560	AGGA	MQKFGFTVINFNTLLIVNCATAEQRYANNVTLPSLYAVTQKQLAKLFKTAR
Ga0209192_100583115	F101904	N/A	MRNLQVHYTYKTQNATVADLCIVQSKTKRFTKTQQLNTQLKLAKQLNLKHFYAVTLTHYSVV