Scaffold Ga0209192_10050290

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10050290
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1876
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_100502902	F008190	AGG	MEEHIEFNFIYSSDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQSYVESLSNKPITYTIYHSPDITVNGTAELFDDIIEFE
Ga0209192_100502903	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGIILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHLFENRARKMILKAEDFKTAKVLEDRLNEKDRERFYVIIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISSRSFFKGPLSIDSVREFDARYKKGWADKFEKGKLNIDKYLNSLG