NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10032790

Scaffold Ga0209192_10032790


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10032790 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2460
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003219Metagenome / Metatranscriptome500Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_100327902F003219N/AMQEDNQVVIMPPIEGRIPIPKNAKEALPYMSPQEELSMRSNTIKLVSDLVEESIEPTTEDVEHAEELAREMMINPELKPEFGNYPNETIAYLAGLVAQTSHMVAKDLADIKLSVLNGLLQEASLAKTSRERIAAWSKVGEVDGVDAFKKKTEITHITKSGDELEKELLETINSLKSKVIDGEHRVIDDD

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