Scaffold Ga0209192_10020513

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10020513
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3302
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F008577	Metagenome / Metatranscriptome	331	Y
F023446	Metagenome / Metatranscriptome	210	Y
F093896	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_1002051313	F000918	N/A	MRYLTNNEAWDEVSREFTESKRRTKVCQSLFGQDNLIGLNDEQRDLFWKSI
Ga0209192_100205135	F008577	N/A	MNLTWEEIKEIANRLDEIVGMNFHDAMYNVIWERESDEEVEVSDEDIIAIKEQLKRIL
Ga0209192_100205138	F023446	N/A	MSKNVEFIDQLCELMGGDRFFLCDQYCQDDLFEMQDKIANHIANNANEGLGLAKYMVNKFPSTFKTEQV
Ga0209192_100205139	F093896	N/A	MTLTNSEKNILLVSLDHMKEHLFIIYEAGDITLDTFNLRMETWKTVYNKIKQQ