Scaffold Ga0209192_10017454

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10017454
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3656
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017050	Metagenome / Metatranscriptome	243	N
F018269	Metagenome	236	N
F073156	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_100174544	F018269	GGTGG	MKIGINLVGVSYNNASSGGRLRNYEDAIENFHNYIVEPLRKKGHKVQFYLYSYENEKQDKIVNDYIPCIKSQFVKPDYNKLGGGDKVSEGYKVMTVSYLNSLEQLKNEDLDLVISTRYDIKFFQNPFEVYDYDFDKMNFLWREPEFMDLPIVNDTFLVFPYKMLDNVKNSIIEMEENPPHGINSAMHNWYLPMVNEVGEDKVQWVDDRFATAIDNELYILTRKG
Ga0209192_100174546	F017050	N/A	MSKLISGYWWAWREVEAGKKSMQTLRKYYPDADLFINVDYEGDVDGYTKVGKELNATVTRNNFQLGYCGDFGDRDIGYKHWTKEKAVEWLRGVYDACTKTDSKYMMLFEEDDFVLKNISILDTDFSIAIHPTAPSPVRMRRNRIPKQFLDYSKEIGGIGDCPGYASGGGTIFNREHYMDSYERILDKFTDVYDEFCKINKIFGWQDFMFQYIFMLGGYEVIQNHDLCELWEVPDFHGFEILTGCKDPNLVIL
Ga0209192_100174547	F073156	GGA	MTILGCITKYKASDIRPYVESIEQTGFKGRKVMLVYDVPQETIDYLKSKGWDLFGGELQQHIILQRFRDLYKILGSEIKGTVIWTDV