Scaffold Ga0209192_10014140

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10014140
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4192
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000681	Metagenome / Metatranscriptome	939	Y
F006365	Metagenome / Metatranscriptome	375	Y
F047915	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_100141401	F000681	AGGAG	MYKRDQHYNTQISKADLEIEISKHYKNEHGLVIQLMSNCVQDDMIETRHELSCANEELWSLNDWPEGEGFGSSDRHSYIDRVKESIAFERKFLQAENELVTINKLEQSPKNDDVRTYMKMNDKIAEGMVA
Ga0209192_100141406	F047915	N/A	MTNMKAIGISFLDGMLFGAYTVGPVMVFLWSVGFITIN
Ga0209192_100141408	F006365	AGG	MAGMHEDHIRWQCDPKKPVKIKRITINEETTPDEPMGPKGSVINYPADYDAGFKILKEWVDSEGGPPEDVRMRLRELFIDYTPVEKKKTK