Scaffold Ga0209192_10006337

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10006337
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7085
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024076	Metagenome / Metatranscriptome	207	Y
F028319	Metagenome / Metatranscriptome	192	Y
F031028	Metagenome / Metatranscriptome	183	Y
F043624	Metagenome / Metatranscriptome	156	Y
F058460	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_100063371	F043624	GGAG	MSKIITYKVEDIFEDIEGDDKNVNMTIPPEISERMGWTEGDILKITVENGQISISKKEPDGEE
Ga0209192_1000633713	F058460	AGAAGG	MKYLPQEDNRKYDEEARNLIRTLGFEKQYELYDIVLKKQKWSNSSTRDLELVAVAKAIENTRGIDEHRLSRIKNGFKSDMAANARPQDGFTKPAKKKA
Ga0209192_100063374	F031028	GGA	MKFTHQHSDGTKIEIEMAEHASIDNVLEEFQNFLRACGYVVEYNQCLVLEDMDES
Ga0209192_100063376	F028319	AGCAG	MTPQEISEYKMRWMRDSSHSVRLHSDLDTQGKTWCRRNIERHQWKMNTWTNVYEHTFYFEMKEHALEFEKQFPKFTNQ
Ga0209192_100063377	F024076	AGGAG	MSRRITFEESLGASDWGLIIDKKGHLKGLFIPDGSSEDDVPEGIIQLCCNQFGIDPEEFYGEDVRPAVYH