Scaffold Ga0209192_10001501

Overview

Basic Information

• Taxon OID: 3300027752
• Scaffold ID: Ga0209192_10001501
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18530
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024076	Metagenome / Metatranscriptome	207	Y
F028319	Metagenome / Metatranscriptome	192	Y
F077166	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_1000150119	F028319	AGCAG	MTPQEISEYKMRWMRENPHPVRLHSDLDTEGKTWCRRNLERHWWKMDTWTNVYEHTFYFENSEHAKLFGQQWPEYTNQ
Ga0209192_1000150120	F024076	AGGAG	MSRRITFEESLGASDWGLIIDKNGHLKGLFIPDGSSEDDVPANIIQLCCNQFGIDPEEFYSEDERPAVLH
Ga0209192_100015019	F077166	GAGG	MKDNIEIMQGPFSSALTEDTEGVLYREIKTVRVKDGMLTEYVTKRNYYDTGDYNDTSTVSPIVKVNL