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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027752 Open in IMG/M |
| Scaffold ID | Ga0209192_10000867 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26555 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (12.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002033 | Metagenome / Metatranscriptome | 601 | Y |
| F004631 | Metagenome / Metatranscriptome | 430 | Y |
| F080527 | Metagenome / Metatranscriptome | 115 | Y |
| F083383 | Metagenome / Metatranscriptome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209192_1000086732 | F002033 | N/A | MNKFDTFLSKHGTKIILILLVLTYFKSCGINSEVEKVKKELRLIEAEVDTLASQIVNEAEMIKLIKEVPAWKTLRIEEISDKERISINALEEKED |
| Ga0209192_1000086743 | F080527 | N/A | MKKPIVVYYLHYYDEEHRERAFNKFKDFTICVMAEDNNEAIEKAKIIAQNPNIKIMGIATGREDWVNEIAPMGTGEQIMPQGGWNQQWKNN |
| Ga0209192_1000086749 | F083383 | N/A | MKEYNVKYKVGQEVYVLRSKKITQNRINKIRVTEQQPYIKGNLDGTYIEMDGIEIDYLIETKRDFIHPHTKSTQSSYDWYSQEDVFTNKDELITQIV |
| Ga0209192_100008679 | F004631 | AGGA | MQHLKTFESFINEAKPYSKDEIVVFDLDDTLVITDAKIKVCDNSTGDCFALTPEDFNEYESNPNHDIDFDDFKSLEIMKAGKLIEHYFKIFKSNYKRGIAVGIVTARDDREMIYTWLREHVGFRIDKDLIFAVNDPVHKFKGAIADRKKQAFETYIQMGYSNFKFYDDDAANLKLVKSLEKEHLHIQIYTKKAKKPKY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |