Scaffold Ga0209192

Basic Information
Taxon OID	3300027752 Open in IMG/M
Scaffold ID	Ga0209192_10000437 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027752 Open in IMG/M

Scaffold ID

Ga0209192_10000437 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41574
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (14.49%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41574

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (14.49%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

73.2247

Long. (^o)

-150.2247

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F059027	Metagenome / Metatranscriptome	134	N
F085894	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209192_1000043722	F085894	AGAAG	MKTARFLIKKEIKEVLNKLNLVREDFQMLRDGKWVPDKQSCNDSIDNIESIINIIDDE
Ga0209192_1000043725	F002047	N/A	MKQKISLPDAITADRDILVIKGFIELKDHQYVMTAQAKVFCATLDSYFIKAKKKTDIQLMGKDFVEKINSYREIFPPRKLPSGNPARNNVKALGESFRWFFETYDHTWEEVEKATSMYVNEYRDADYLYMQTSQYFICKQDKHKVKHSRLADYCDMIVDGVSTEDEHFKENVV
Ga0209192_1000043754	F005243	N/A	MSVKQINPELQDKDPQMSKEELAKRREEITAFYKDNIPHLEVQADYEGLLAAIEKSRAERMQAQMYMAQQYAAQKGEGGPDLDSADGKAFQEAMAKAMDNETA
Ga0209192_1000043756	F004866	GAG	MAIVNKVDLKHQVDIDVLIKYQIVTYCFFNDTLISNSDLKFLTELAKFQDMEMTKFCNYTVDQDIFKSSQSARNAITKAEKKNLLVKKGNNKKTISLNPDINVQSSGIVLLDYKILGRESKES
Ga0209192_1000043757	F006666	N/A	VNPKSHKEFKKGISDEVGVHPSVVDDFVSFYYAKVRQNLSVLSFPRINVEGLGTFHLRKNKLEKSILKNKSLLGNIAKRTYNGFAKSEDIQKNILQMENAMIQLEKDIINKKEFKNVKN
Ga0209192_1000043768	F059027	N/A	MGKPKQVNKLSQKFESSAYEGVSRAQTGNARLLHVNEVISWIRDLADSTTYADEDAAKADGLKKGDLYIQTGSGAINIVLTT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209192_10000437

Overview

Ecosystem & Geography

Associated Families

Sequences