NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10000299

Scaffold Ga0209192_10000299


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10000299 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54150
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (69.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022641Metagenome / Metatranscriptome213Y
F028319Metagenome / Metatranscriptome192Y
F050275Metagenome / Metatranscriptome145N
F058189Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1000029915F022641GGAMNRTLIVKAVANIVSGISLVTLISLGIAYMSFDNAFVFQDIKIEISNNPVEGDTIDFVMIGSKKHECNSTRVYGVAYSDNGHMHMLDKFKKQYVRNTRPGKEIPNQWTMIRPDAMSEGGEYRVSITGDFVCNYLIFQTEKSQTYDNIPLTVLPLNK
Ga0209192_1000029937F050275AGGAVINNNDILVFNFDFDKQCLLDYWNEHKQHSMPYTDKRFGKYAMNNWRIVTDIELAYADTLARHFNINAVSKFYILHANTTLLPHIDQDTTCSINFLLSGNPAPVNFGKNEYYYTTALLNTSIKHSVDNSTEDRILFKLSIKDESYDDVKQKILNTLSRS
Ga0209192_1000029961F058189N/AMKFSCPVDFHLPTQELYDIYWNEFGHKLDSRTLYKDDNRILPVVTGFLITGKDIKWPVQSLLDALDIELQTARLFVTNPHRKLQIHKDCLGQSKELRPWAINIPIANCDLGINEWFEDHNNDFGTEQFAPGGSAMMPEYFDNNYIVSESIVLNSIQLIKTDVFHRSNNTGNDNRRVVLSLRGKPNVTWADILEKVNVYNRRRAEDNS
Ga0209192_1000029964F028319GAGGMTPQEIAEYKQRWMSTGNNNPVRLHSDLDTEGKTWCRRQLERCQWSMTTWTDNYEHTFYFELEEHATKFEQQWPEYTNWKKT
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Institute for Fundamental Biomedical Research
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