Scaffold Ga0208304_10016444

Overview

Basic Information

• Taxon OID: 3300027751
• Scaffold ID: Ga0208304_10016444
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3036
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024582	Metagenome / Metatranscriptome	205	Y
F036969	Metagenome / Metatranscriptome	169	N
F088707	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208304_100164442	F024582	N/A	MKSTHNTLTHLLGAWDRLEVVGTNPDNYKSILTSTLLPHRNEFGKRQVKIAIEYRIEDGFARAAPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFSKKMRSAHDMQEERIENAQDSITDFLS
Ga0208304_100164446	F036969	N/A	MNTMFSTHAVRLAYGRTLMDGGSSLITSDGYDFEVPYRGFMVGGLSGETKIPLDICDANTFHTIWLKYATEVRKLLKESKLSGVSYAVGTWIDKECIVFDVSEKVTHSRSAYALCKERNEDAYYDVEASKSVFIEKDNDNAEA
Ga0208304_100164449	F088707	N/A	QAKTSTANRVGKVKKTKVVNAADGGEAQPFEPRKEVPVVEPKARKKQQMLTLLPGETPQEAMARQRSAQIEAARLEAEALIADTAPF