Scaffold Ga0209084_1077776

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1077776
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1511
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010983	Metagenome / Metatranscriptome	296	Y
F039994	Metagenome	162	N
F066588	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10777761	F066588	AGGA	MKKALVTQAFGDKWHKVLELTKPRMESYCQRHNIDLITFEKPLVEPVQYSKLAIGNIIATKGYEQVTFLDCDVL
Ga0209084_10777765	F039994	N/A	MGVVEEIQSARDEVVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWMQLKKGLPKL
Ga0209084_10777766	F010983	N/A	AKRVVKDSKQATTKAAEHGTKMHEQMEHILLGRACSKDPELQPYIKTFKEWAEDNIEKTHWCEKALVGAGYAGRCDAYVRLKGIGDAIIDLKNRKVNPRYSPLYDSDCAQLWAYKYASENPKCACVSVILAANDPETLVIHRWSEDELYEAGIAFQAMLKVWAWSKKYNPPGMKL