NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1036312

Scaffold Ga0209084_1036312


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1036312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2483
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F018537Metagenome234Y
F018924Metagenome232N
F059953Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209084_10363123F059953N/AMELVKELKELKNKIKYMNLELTLMELNDLYYVVSKGVESHKELVEIAKRTTPELEKYFEKELSKSVQLLDKIQTVLHNEYQVMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR
Ga0209084_10363124F002092N/AMRTTNQKAIDYLNGNPIVKDFINKVNIQRKDHYVKADMVSQWKELTIEIGNKFIRLWDGTGCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL
Ga0209084_10363126F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKNWGKSRQNDVPWRVAQYIDIYLHSANPNRIRIWKKQGMERQNLSLSDNNVIIARTLGSMGCSLADGVKHSEQSKGIPALQAIQTMQYNFQMQDPKFKRKEMKRKYMNKSYKLQKGDWGYIAQEILDYTYLCNRVSFSQLKSFYDIVMRGNATTQNGGSFIHHLQSLVSPTNALGRRCKRYLHKDIITGKYRIATM
Ga0209084_10363127F018924N/AMTNSEKAIAQLFGVLCSIIKSEHTPQMTKQATINTFQHLIGEDGSPFLDDELIKLSTAMDEEMQSIVRQLNGDRVLNEVLTNNINLN
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Institute for Fundamental Biomedical Research
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