Scaffold Ga0209084_1028393

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1028393
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2903
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F019478	Metagenome	229	Y
F024555	Metagenome / Metatranscriptome	205	Y
F038242	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10283933	F038242	N/A	MLTIKNIKELELNFCHQRGLKRIKERTNALGEHFYCFNFGPISDGKGWNKETEVRLGRELQRGGYQIFVMGLQMSTRHFVTIDDIKTKDGLVLAISKVLAQAKWWWENEATK
Ga0209084_10283934	F024555	N/A	MLTITNIEKLYKLNVGNWRIGKVETLDSAYLIQLRKYNSIETKQVNIERTPIGEGDTALYELWFWDDGKPIRRLLRKCDFELGPLYVIKNIENMMNLK
Ga0209084_10283936	F019478	N/A	MELKIKNTNRMVGIMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWVEIRKDGRMDSDGDWVYSLNYMRCNQHSITAKWFEDWKNVTKTFGDALKKQF
Ga0209084_10283938	F006547	GGA	MKWIFIFLFPVLVSAQIYDTTYQMIYYQKALLKKRKFEFYLYTSYDLWWEDESGIGLVYTLPNRRKKKTKRK