Scaffold Ga0209084_1013705

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1013705
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4694
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012978	Metagenome / Metatranscriptome	275	Y
F013085	Metagenome	274	Y
F015729	Metagenome / Metatranscriptome	252	Y
F016809	Metagenome / Metatranscriptome	244	Y
F021108	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_101370510	F016809	N/A	MSKINNEFMKQQLTGSIGGDEDYLYEQYIAAEQMNEEYWQWKNEKSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGNT
Ga0209084_101370511	F013085	N/A	MEILSEIIEASNHMIDALEETDFFVETPFIDRIPLKRALQIAMQRKWEQENDMFLNDAEFLEVCQSVSNKSIGKTIEDLVDKGALNMSINEDGEILYSANKDFQFDKDDDDDFQQD
Ga0209084_101370512	F012978	N/A	MIFNKTDEELKMMSEDELFEYLDAKTLYLKQHTSPLSSYYTKKFASIGAAVSNTKFDYDSVKQIAKENEQKGFEKFIKDKNKNNE
Ga0209084_10137054	F015729	N/A	MKRPKNFETIDAVDFEIHGHNFHTDLDLLQNKEKSSWVWVFPDGGILGDYVVLFELKWEHNCYSMKKCVLGEGNTGNYIFQDHLLSSDMMQTKHHFVAHIKWIIEEEMRVGNFQN
Ga0209084_10137056	F021108	N/A	MAQTVTTQMNEFRRLEDGRIVLDGLVWSQQAEKAIEVKDEDNGFKVFNINLDGVSYYPVGYDKRKKK