NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1008541

Scaffold Ga0209084_1008541


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1008541 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6437
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F002869Metagenome / Metatranscriptome524Y
F011224Metagenome293Y
F017266Metagenome241Y
F034176Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100854111F011224AGGAMSMYMAYFDTLGFEWIFDITDYEKKKFWAALKGNDKVDMPIPRYAILRAQANPQRFPEIWAFESDISRDELEEYARENPQVLADAIRNCGQNVFKTHKPETVIN
Ga0209084_100854112F017266GGAMGKSQVNDLIRHFYANMTPIPKIKWQRLPGLKLQAYTDEVAPRGFERGLNETDMDPVQAWTTECNCGTRMSFNVWKFKNEKQITMFLIRWSS
Ga0209084_100854118F034176AGGTGGMRHNYAKQRDSDEDFEYFISKFECRIEDSREYNQHVRPSSYHQDFYDRDSFQMETKITPMKAIHLTSDNLARLVAEQEHIQHLMKDAEYGKKCWDHERRDSMVRNGNPAVEKAYQKYVMLLELCREG
Ga0209084_10085414F001008GAGGMSKEQHKKYQWIDGETADRITSMNLKDYRAYLKKELKQWKKNPKSDSNPDGVWMHPEDVGLNVQTIAALDLIISHFPETSDEIK
Ga0209084_10085417F002869GGAGMTNEITVEMLDRKIAWCQQNAFWGTPSAVPQVLDFYFEKTRGSVDEDWPESFSLEDLADTLGIPQVRYRIYYSQDNLTLRLFVFRPRCTWDEQKIMLDLGFVVAQDNDSNTIPNQPVEEV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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