Scaffold Ga0209084_1007746

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1007746
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6886
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F021263	Metagenome	219	Y
F022373	Metagenome	214	Y
F056314	Metagenome	137	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100774611	F056314	GGA	MTSRTHTPEDVKAIESKYSLNIWERALGWRKRQMILKQLDPISNQIRNNTLEEVAKEFDGMKNGGDTTASFASYVRSMKK
Ga0209084_100774612	F009801	AGG	MNECKKEYCDFIGSKAFEDDGGWSYEVWEAAQQAAFKRLAARFAGYGDIDYTGHEIARYVNYLAKQDVP
Ga0209084_10077465	F090062	GGA	MLTTEQLRRKARTIYNNDMVPEHTNRHNQRKWVRAVLRLGDHWLTAKPLGRLNATESNP
Ga0209084_10077466	F022373	GGAG	MQPKVILEFSYPDDEDRLLFAVKGPEMYKALTNIKMAVTGEFTHKADMAVALARIRDLTDQVFAELGE
Ga0209084_10077469	F021263	GAGG	MTNEEREMDLNIADLEAENRRLKKIEQAAQTVVKSFSNSIDYNTWDNALDALEAVLKEKL