Scaffold Ga0209084_1007385

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1007385
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7090
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F010916	Metagenome / Metatranscriptome	297	Y
F011934	Metagenome / Metatranscriptome	285	Y
F013298	Metagenome / Metatranscriptome	272	Y
F017998	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10073851	F011934	N/A	MITVQKTILHEWTHAQQTFRWYNHYNLKYGYKNNPYEIEARENEKLVKRAYKKSK
Ga0209084_100738510	F003291	N/A	MSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVIDRGNGKMGVAEYKMSEAQLDSMYESDVRAHS
Ga0209084_100738512	F010916	N/A	MSTVQTIQDELLSLVMGHDWSYMMSDSHSVWEAGMRYEKEIQAKIHALVAVHREDAETLKGIVRGIAGSDYTDYDSKGYGLKYRTINGWFKPYIG
Ga0209084_100738515	F031098	N/A	MKTYYDIAIHTASNDVVNVKGVSYSMMMKIANDNPTLIKVEIVKEYSKKISKY
Ga0209084_100738517	F037728	N/A	MMKRLNITNFTHRVMEIHSDYFEVGYCSNGKDRYLIGLDTRDVVSFKPLEPKHYKMSIDKVTNEDGNYGIWLWDMGENISYPMSIMPDNISSLSEFTSFLNHTLKLANNGDFSGDTGNRVDN
Ga0209084_100738518	F017998	N/A	MNLERLDLEKYEVLELERDRTLADPLYQQWMSELKVSSSYTDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSILK
Ga0209084_100738519	F038234	N/A	MLTIKNIGSLKDTYVGHWKIHYIAKLADTYIIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETGKTKNMPIEDIRNSYTFIRFLIDELI
Ga0209084_10073853	F013298	N/A	MGKGINPEATFDGLAKTLSNCHCVYEYIYVYDSIIRERLFEKLASIKGCEYEVIYQRWLSPIKKSL
Ga0209084_10073854	F013298	N/A	MSIREFYVKNYPSDDMGDGINPNATFDGLWEIINKYGLIKDVYDYLYVYDSLIRERVFEKLAANKGLEYDVIYYQWLKNTAL
Ga0209084_10073857	F005389	GAGG	MANKSKQAAKRTNLYETVSNNIQKITRPSGTVSYRVRVSEDGQMFSQYETSLKKAKALRNSWVG
Ga0209084_10073859	F001754	N/A	MSTIANPFRNFSASKMSNNPRFEVVVSFRDFLGKEHNIVCKNRKKLAEANQFLKMFKTESVKINSILSEYPVVMGAFPKKYHSEIKRELASAGFSTVSNFLIK