Scaffold Ga0209084_1007189

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1007189
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7208
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011276	Metagenome	292	Y
F023104	Metagenome	211	Y
F034176	Metagenome / Metatranscriptome	175	Y
F037029	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100718915	F034176	AGGTGG	MRHPNLKHRDNAGDLEYFVSKFECRIEDSREYNQYVRPAPYYRDVCGSDDWRMETKITPMKAIHLTSDNLARLVAEQELMQRLGEDAEQGKQVWREKIRDRAVRDANPAVEKAYQKYVMLLELARK
Ga0209084_10071896	F011276	AGG	MIKGLMGAGGVTVNGGNVSLSHVTPNANNPMTGMLRVHNTDIEVFNGNSWQQLSSSYATVSLDQETQDLLLWAKAQRTMSMNRLTLAQNNPALMKALEAVKRAEDNFEILSKFVEHDHDNTTISN
Ga0209084_10071898	F037029	AGGA	MGSNQGMTFRQWCYEKWLEHRDELESYGQGLPDSADKYFGQYKYWLKREYKHQRDQQ
Ga0209084_10071899	F023104	GAG	MNILNIRIEFTNPFDRWDYFRNLGCVSGMLGRFTAWELEHSYYSPLLFDFEMRWNRKTDHAGVEFGIGLLGYGIHFRIHDTRHWDDYHQQWEVYKFDEYFEINR