Scaffold Ga0209084_1005159

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1005159
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8943
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (33.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001338	Metagenome / Metatranscriptome	719	Y
F001923	Metagenome / Metatranscriptome	617	Y
F002038	Metagenome / Metatranscriptome	600	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F006659	Metagenome / Metatranscriptome	367	Y
F019449	Metagenome / Metatranscriptome	229	Y
F021107	Metagenome / Metatranscriptome	220	Y
F074555	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100515910	F003714	N/A	MPNAHHPYTDTLTFAGRPITLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDMTGTTWVNVKRRGPYSSRA
Ga0209084_100515911	F005588	N/A	MITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLDDILDLQRRTIAKQAADIKLLQARVRDQDDAIIKGTAITPDAYPHE
Ga0209084_100515912	F000957	N/A	MSNFQHLEGMRNLLAEIYEVNERIMTGDIVSAKAAIASTNVKKILTHYHEALHEDGAVKVSLQAYVAAGGWVGITYSYELDGFEVAGSQVPRRV
Ga0209084_100515917	F006659	N/A	MKKDIKSPSEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKAADNTK
Ga0209084_100515919	F074555	N/A	MSQPDPFAFFNAAVKAAETQNELLAANARIKQLEERLEALREAGDDIWYCVRHAKTVHPQELIEAIEHWQEARNDG
Ga0209084_100515921	F002038	N/A	MSSPTPAGIERVARTVKGQYALLLLLDGYPYVELTARKHADYLSDLGLWKRKTHPSLARSQVRFFTVDPIGTLKELTFNR
Ga0209084_100515924	F001338	N/A	MTTENNDRPPLTSISANGTYRLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYMQYLEPACGQTILVGVECEANGEYNGRPQFKYKMTYPK
Ga0209084_10051593	F021107	N/A	MITIIVSLLIGFIGGFIAGIKNAKSAKVEKAVDILKALKGKD
Ga0209084_10051596	F019449	N/A	VTTETFTTIVVPGIASAAYLSASIACFIAHRPALAVMWLCYSIANVCLLSTVLRK
Ga0209084_10051597	F001923	N/A	MSPPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVIRRVLAAAITAALVGYAITDHIQSPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGPAAKKPNGKSKAPGKAKRKH
Ga0209084_10051598	F003583	N/A	MLTGFAGVAALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFLRSRRQKAS