Basic Information | |
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Taxon OID | 3300027749 Open in IMG/M |
Scaffold ID | Ga0209084_1001200 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22328 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (57.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001483 | Metagenome / Metatranscriptome | 686 | Y |
F011221 | Metagenome / Metatranscriptome | 293 | Y |
F034459 | Metagenome | 174 | N |
F088289 | Metagenome | 109 | N |
F095481 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209084_100120018 | F088289 | GAG | MIKIVKLITGEELIADVTGGDITMTLSKPCALQMVPSRNNPDQPMMGMFPYAAYTENHCIDVDISKIVWDAKPVKELYNQYNSAFGSGIQLAGL |
Ga0209084_10012002 | F095481 | N/A | MYLLAYFMIGFGFGIAFYYMFYYDDSITKLERMKHDVAMCKEWFRMLSDQKLKELKWPAGWS |
Ga0209084_100120021 | F011221 | AGGAG | MFYSNMAIDSIQNAKINFLKQTVKEESLQKPLVDFVEAQRVFTKQIAKSANDVITLATETFANAITGTTKKRGLI |
Ga0209084_100120031 | F034459 | AGG | MNVALIFVGISFGHKSERDFNHCFPNIDRNIIQPLKKNHSVHNYVVTYDNDRMDEVNKLLNPKKLISISFEGSHQNTTRTKASTVTGNDYIDFYIMTRFDIHYNKSLEEFNLDWDKFNITSREGNGFWESQQFVGDTFYAWPKRLHDQVVQGFNVLTNGEVKYDFNHMHNFYSILAPIMGAENIHFMSEEPQLSGHLLTSLCTRDYCDRLRSKIPINEEILARFP |
Ga0209084_10012005 | F001483 | GAG | MDKLKQTLLDILGWIGSSPFRLFAVIILSILGFVGWVAYTEKDTFMASYRAQQALPKMNNNYQAASNFIFKNSQAELVAIFEVNTLLNSRKLVFLATRSKGRITDHDGAEVGLLTKNYDNNQDVIGLMSGKIPCGPYARPQSYIGFTYKENGTQFMCRISVPVEPGLFIGQISVGWKEEPPEIDIAQTVMGVASGLLYSKKQ |
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