Scaffold Ga0209084

Basic Information
Taxon OID	3300027749 Open in IMG/M
Scaffold ID	Ga0209084_1001200 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027749 Open in IMG/M

Scaffold ID

Ga0209084_1001200 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22328
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (57.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

22328

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (57.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001483	Metagenome / Metatranscriptome	686	Y
F011221	Metagenome / Metatranscriptome	293	Y
F034459	Metagenome	174	N
F088289	Metagenome	109	N
F095481	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100120018	F088289	GAG	MIKIVKLITGEELIADVTGGDITMTLSKPCALQMVPSRNNPDQPMMGMFPYAAYTENHCIDVDISKIVWDAKPVKELYNQYNSAFGSGIQLAGL
Ga0209084_10012002	F095481	N/A	MYLLAYFMIGFGFGIAFYYMFYYDDSITKLERMKHDVAMCKEWFRMLSDQKLKELKWPAGWS
Ga0209084_100120021	F011221	AGGAG	MFYSNMAIDSIQNAKINFLKQTVKEESLQKPLVDFVEAQRVFTKQIAKSANDVITLATETFANAITGTTKKRGLI
Ga0209084_100120031	F034459	AGG	MNVALIFVGISFGHKSERDFNHCFPNIDRNIIQPLKKNHSVHNYVVTYDNDRMDEVNKLLNPKKLISISFEGSHQNTTRTKASTVTGNDYIDFYIMTRFDIHYNKSLEEFNLDWDKFNITSREGNGFWESQQFVGDTFYAWPKRLHDQVVQGFNVLTNGEVKYDFNHMHNFYSILAPIMGAENIHFMSEEPQLSGHLLTSLCTRDYCDRLRSKIPINEEILARFP
Ga0209084_10012005	F001483	GAG	MDKLKQTLLDILGWIGSSPFRLFAVIILSILGFVGWVAYTEKDTFMASYRAQQALPKMNNNYQAASNFIFKNSQAELVAIFEVNTLLNSRKLVFLATRSKGRITDHDGAEVGLLTKNYDNNQDVIGLMSGKIPCGPYARPQSYIGFTYKENGTQFMCRISVPVEPGLFIGQISVGWKEEPPEIDIAQTVMGVASGLLYSKKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209084_1001200

Overview

Ecosystem & Geography

Associated Families

Sequences