NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1001200

Scaffold Ga0209084_1001200


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1001200 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22328
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (57.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001483Metagenome / Metatranscriptome686Y
F011221Metagenome / Metatranscriptome293Y
F034459Metagenome174N
F088289Metagenome109N
F095481Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100120018F088289GAGMIKIVKLITGEELIADVTGGDITMTLSKPCALQMVPSRNNPDQPMMGMFPYAAYTENHCIDVDISKIVWDAKPVKELYNQYNSAFGSGIQLAGL
Ga0209084_10012002F095481N/AMYLLAYFMIGFGFGIAFYYMFYYDDSITKLERMKHDVAMCKEWFRMLSDQKLKELKWPAGWS
Ga0209084_100120021F011221AGGAGMFYSNMAIDSIQNAKINFLKQTVKEESLQKPLVDFVEAQRVFTKQIAKSANDVITLATETFANAITGTTKKRGLI
Ga0209084_100120031F034459AGGMNVALIFVGISFGHKSERDFNHCFPNIDRNIIQPLKKNHSVHNYVVTYDNDRMDEVNKLLNPKKLISISFEGSHQNTTRTKASTVTGNDYIDFYIMTRFDIHYNKSLEEFNLDWDKFNITSREGNGFWESQQFVGDTFYAWPKRLHDQVVQGFNVLTNGEVKYDFNHMHNFYSILAPIMGAENIHFMSEEPQLSGHLLTSLCTRDYCDRLRSKIPINEEILARFP
Ga0209084_10012005F001483GAGMDKLKQTLLDILGWIGSSPFRLFAVIILSILGFVGWVAYTEKDTFMASYRAQQALPKMNNNYQAASNFIFKNSQAELVAIFEVNTLLNSRKLVFLATRSKGRITDHDGAEVGLLTKNYDNNQDVIGLMSGKIPCGPYARPQSYIGFTYKENGTQFMCRISVPVEPGLFIGQISVGWKEEPPEIDIAQTVMGVASGLLYSKKQ

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