Basic Information | |
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Taxon OID | 3300027749 Open in IMG/M |
Scaffold ID | Ga0209084_1001124 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23341 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031023 | Metagenome / Metatranscriptome | 183 | Y |
F041637 | Metagenome / Metatranscriptome | 159 | Y |
F044904 | Metagenome / Metatranscriptome | 153 | Y |
F047663 | Metagenome | 149 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209084_100112410 | F047663 | GGAGG | MSVHGDIKAAMTASLTAVTWTTTTDGVTVESKFFPQYGIEDLATPIICVTDGAVESERIARSSHMRDYSIEIYLARHTPTEAECGVMLNLLEELLGKLEDHTWPGITWPIGVTSPQTIVAEKNPGEGLEERNVWRAGIVVTFKVPRSH |
Ga0209084_10011242 | F044904 | GAGG | MPLRDLAAKIFEPQYAGMDDQPLADAVNGLRVSVRRPVPTWQVRQTAIEGGYWPALIEARESTTPAVRALAITVLAWIDDQSGTIQTVDMDRPAVIGMRAALVQAGLCSQAQADALSALADHSIPWAESVGLPEIGVGLIINARRSING |
Ga0209084_100112427 | F041637 | N/A | MTPDQLQSAVLTFIASARLKAAGGLTVSEFGSLTVEVIRLAVAGLDTISSLDGPGKKAWSLACVGTLFDAVADSCVPFVAKPVWWIVRPTVRALVLSAAGGALEQILTLTRAAAPEPTA |
Ga0209084_100112430 | F031023 | GAGG | MILDRRLVAIIVVTLAVGWWLGSSPSSPINPTPQRPVLAAVGRMARIAARLGLWMAMAAEPAPQLERQQIVRSPAVDAAGNRVVDHGEGW |
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