Scaffold Ga0209084_1000976

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000976
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25436
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (30.95%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F015354	Metagenome / Metatranscriptome	255	Y
F026825	Metagenome / Metatranscriptome	196	N
F029798	Metagenome / Metatranscriptome	187	N
F094803	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10009761	F012111	N/A	MSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFVSPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSDPLIFNGVGIRRANVDEIKCGRMMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLNYPIQTISLLTNGALGSRSAITVNGDVFYRSVDGVRSFIIARRSFKDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGADGAIQFWEISKSEKDDNSVANGPSRIEWLVQTRAYNFEIPFGLKRLDSGDIFIDALDGTAAFNVQYRPDQYPGWLDWANWSECAKTNQCDNLCPIANFKPQYRPKMRLPTPEDTSCNSTTSTPTRNLYEVQMALTITGFCRIKSIRVHAYDVQESVVGECRTFQGCKTLE
Ga0209084_100097611	F012040	N/A	MRGLTKENPKNLLELPDVNIADWITNGQQAELALIMRNPVLRMALRIVAESMPVAMPSHGSKESDIVFAAGITAGYAHCLENLRKLSVVDATKELEATFDDKN
Ga0209084_100097615	F015354	N/A	MNAYFASLLRHLLTAAGGFLVAKGLVSTDQAGELVGAAVTASGVAWSIYNNKKNADAAGQ
Ga0209084_100097616	F026825	AGG	MTGHHAFVRDMSIGVGAPVLGLIGNAIFSEPNLKGASLALGALAALLTCVVKSIELYRKLKNDK
Ga0209084_100097620	F029798	N/A	MANLSCADALTLINEAYGASCKSPRERVLLELGLLWEASTLGGTADITADNTVIDSSSTMITADMTEFI
Ga0209084_100097623	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWAAITLADGAGTNACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPSGVNEFPWIDGVSSGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRIIKNFRHVPNLFPPRFSYASGKYTIVQPFTSASGAKGTVFSVNPSWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0209084_100097626	F094803	N/A	MASLAGHWDEIRARYLAGEELSAIADDLKLVRMSVAARASRAGLPEIRRQMQSVCKEKKIESLESLSALVRSKLAADAISTIERVDTYDLDGIKDESTREQILGSVAKRSALVFGWSDQSEVASVSINLLGSMPDRLDNITLSNRTIEAE
Ga0209084_100097638	F002227	N/A	MKLTIQSTQNAQTIVDLFNAIITGNEAEGATPLSIYDEDKHICSLVGKNGEQILELIIERESGDKLCAGAIEEVLSPESDEDQRKVN
Ga0209084_10009764	F004664	N/A	MVIPGGWHYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPGNLDDLIVEYACRNGADCTYDEVELSKPAGRKSLEIGDVIRFSMSLLHGLTVGGGKVGQEEANRRANICAGCRFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDEQLQSCEFCGCFIRSLVWFPIETLYKFADSTENENLPNHCWKKRPCTAT