Scaffold Ga0209084_1000764

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000764
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29418
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (20.00%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001338	Metagenome / Metatranscriptome	719	Y
F001725	Metagenome / Metatranscriptome	645	Y
F001780	Metagenome / Metatranscriptome	635	Y
F002038	Metagenome / Metatranscriptome	600	Y
F002413	Metagenome / Metatranscriptome	561	Y
F004790	Metagenome / Metatranscriptome	423	Y
F006659	Metagenome / Metatranscriptome	367	Y
F007416	Metagenome / Metatranscriptome	351	Y
F017613	Metagenome / Metatranscriptome	239	Y
F029754	Metagenome / Metatranscriptome	187	N
F037112	Metagenome	168	Y
F074555	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_10007641	F001780	N/A	MIVTTRMSHNRKATVNDLTAPHAEAKSFDSWFFAQPKKVQEKMRESGVLPYREMVQSRWVYNIDPNHPSWSTDRDKTRSMSMDEMNIRTEVDAFISRDHVGVMLKAFMDAISQSDSMPFRRHVELIRWALSLPGCLDSRTIAGMYGRSHIWAQKRARQIRSTVNGDACGLFPHINSRRDKHKSPTHHPRTPHK
Ga0209084_100076411	F002038	AGTAG	MPDLPAGIERIAKTVAGQYALLILLDGYPYVEMSARKHADYLSDLGMWKRKTHPSLARSQVRFFTLAPSGEIKELTFNR
Ga0209084_100076412	F074555	N/A	MSQPDPFAFFNDAVKAANAQNELLAAQARIKQLEQYLEGMREAGDAIWYCVRHAHTTGPSELIEAVERWQVARNNA
Ga0209084_100076414	F006659	N/A	MKKDTKLPTEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSAESK
Ga0209084_100076426	F037112	N/A	MTTYRITYLLGRIDNSKCPPDVLYTLFPAFDGNQAVTASQSEITVTFDTPQTPVDLGPLVRVEVIDTV
Ga0209084_100076428	F029754	N/A	MSCNTVTFKRGTNFGSSTVFTPEAAPAIQTLSGVTVTSTIVDADRNEYDLTVVVAGDFLSFTADYSGSTADWAIGTARWDIKFAQGTTIFYSDTMRLDIIGQVTV
Ga0209084_100076434	F001725	GAG	MAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELTVEGIAKTATIPVLGATLSFTLNTASAYPSGSASVSFTGTITKIDDKGQNKGFTSVSITAIDYEGITPA
Ga0209084_100076435	F001055	N/A	MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDATCYDVTMQSEDEGIDERSWATAFSFDILTVFPA
Ga0209084_100076438	F001298	N/A	MSLYADFLADAKEMIADFGVAGTANSGAITFQCLISDPAVMTVLEAGGYCERTQYSVRMPAVTASWTLPDGSTGSSAALLSAGVPIASLGQGKKIVTGGKTVRITTQTYKPGSAWITLVVIDDNQ
Ga0209084_100076439	F017613	N/A	MANSITAAPSVLAAGVLSALQNKLPVLSGISSVFSARPGSSGMSITVPLIGTSTASTFSTGGYLTGDDATVTQTAVTLAHYKISSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINAQITNANYSVSTVSGADLSYLELVAVQKTLDDAKAPSPRFAVLNSTYIAGLRSDTTIVGNNVLGAQIIRDGDLGIIAGARVYQFANLATNSENLAGFVAGPDAIAFASALPDSEGIPGFDVSNATDANTGLGVQVLVGMEQSGFMNVTATLLFGCAVGRATSLVRLKTA
Ga0209084_100076443	F007416	GAG	MSSGIFLGLTECELLDIKAKALAMIMEGKTLISYSDSGSSASRQMVMPAKEMLSEAMFALSRLDPQTYGRSITTISTSWATRRD
Ga0209084_10007646	F004790	N/A	METLTLETLAWARKVGLPPDRVAFLLACPKYTVSKGHRKSDRVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLLTARKRRDEMLAAFDSGNAIPHVNAK
Ga0209084_10007647	F002413	N/A	MTDEAPLPMSAPTLVLISGFARAGKDTLATGLLEWSTRAAEHINFADALKEAGNHYMDYLGLDGNFLNEDFKVENRDALVHMGRFARRLDKDVFARHLANWCPVMKHPDSPSPETVVTSDWRYINELRVCQDILWEKGWKVRTVYVSTTGVCPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMNEGRLLAKSWRL
Ga0209084_10007648	F001338	N/A	MTTENNDRPALTSISTNGTYKLKLIKPKFEKVKVWEDGTCSARLFFVDHNGFCLSKNFSTKYGKALAMLVGKYSSKFTEEIRLDATAAEYLQYLEPACGQTILVGVECEPNGEYNGKPQFKYKMTYPKGSQKPVVKDALPDNPPF