Scaffold Ga0209084_1000566

Overview

Basic Information

• Taxon OID: 3300027749
• Scaffold ID: Ga0209084_1000566
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34886
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (57.81%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F012113	Metagenome / Metatranscriptome	283	Y
F026543	Metagenome	197	N
F030060	Metagenome	186	N
F041645	Metagenome	159	Y
F049401	Metagenome	146	N
F060551	Metagenome	132	N
F063298	Metagenome	129	N
F074409	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209084_100056615	F063298	AGGA	MSDKQTGIELKKTITLLEKAKSETVEHMGECISLAADAGDIIASARKEDADLDTILSIAGINGEQARRLERVAKARPTLSAPAPGQLKQLALWAGILPDPIENSTPRPERAWHHYIVLAKQWIAKKVVDQWSPEQRSEFIDEARPIAQAYKDAGGEL
Ga0209084_100056617	F060551	GGCGG	MKTDGQDPADSIRASYTPDMAETIDTLEDQMRERLSQMQAMNPALGLDQLAKMLTQIVEETVSSQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFMNPSTGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR
Ga0209084_100056631	F074409	GGA	MNRHGVKAKNSELVLERLKGIEIKARYIDGEIMGMRTRSAKGTIILIDAFDPANPLPISERLKLIEEIEPASYEVKANALLRMPRLDHDKLKACWAEMDYQNQKAGEVVWEGFVSKDDQKYPWISNPSYCSPEWHKMRIRW
Ga0209084_100056638	F049401	GGTGG	VQRLGQKETMQKLNIAVGFAMLTLILGGVLVLSSCASTSYNYTAPAPADIPALIMEWDKLERSLGQVKPEFREQYAKALKALSNAIAEEERWRSRAENK
Ga0209084_100056639	F012113	N/A	MQQILTFIQSQDIFAWVGAVVALLSAVIAIASLIPGDQPEKFLQSVVDVLSKFSKK
Ga0209084_100056644	F041645	N/A	MATTIIGSAINTKVLKRQNFNKEINGLETLIEAYAIKTSNRVSVVPAKDTLHSAFSSASTTYTRMAVESVATEEEDGGITSMIVTYVGLTSSTGLPPAVVRLIPTAGAGVYGPPLVIEVEFVTDVTESQFASGQQATTNPAAYSGGWTTFIPMPASINGTALPVNIRKPFNNNGLVIERYYGYCADSFSCERRGLFLVAKNIYAEKQEIATIS
Ga0209084_100056648	F026543	N/A	MEGIAYWGTTNIKVASAVAGAGGKLRKLDPVSRTIKEDGSSQVTFWFEAGGKGAEVRAEMECPWSEMKCPEESPIRYVRAALENRETLLGLVKRATSIRVIERGGQTLLVSENATSDQKRAMLRHL
Ga0209084_100056660	F030060	GGCGG	MTKGTIDSEAPQIHWEHLNVKGGRVLDLGCGFWTEAERQEGNGTAKYFLSQKPEFYMGIEINQGDIESLSRQYPEGKFLCQRIESSEQIQGLIKENLITHIKCDIEGEESRMLQIADVGTLKEIAIELHYSDLWLKEFMTWFESIGFECYQYDSVSFCSEISVIYGRLKC
Ga0209084_100056662	F003049	AGG	MKSTKQIIGCRTAKKGEHTKGLGIITFGKSRPCKTKFVNVDITYDEKAKKELYEAGMLALKQDPEAVIEYVIKKALIEMARCKK